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WormBase Tree Display for Gene: WBGene00021868

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Name Class

WBGene00021868SMapS_parentSequenceY54G2A
IdentityVersion2
NameCGC_nameatln-1Paper_evidenceWBPaper00042415
Sequence_nameY54G2A.2
Molecular_name (12)
Other_name4D561Accession_evidenceEMBLAF303255
CELE_Y54G2A.2Accession_evidenceNDBBX284604
Public_nameatln-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
204 Jun 2013 14:47:04WBPerson2970Name_changeCGC_nameatln-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classatln
Allele (154)
StrainWBStrain00031831
WBStrain00047686
RNASeq_FPKM (74)
GO_annotation00081747
00081748
00081749
00081750
00081751
00105774
00126073
00126074
Ortholog (34)
ParalogWBGene00012763Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable GTP binding activity and GTPase activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in hereditary sensory neuropathy type 1D; hereditary sensory neuropathy type 1F; and hereditary spastic paraplegia 3A. Is an ortholog of human ATL3 (atlastin GTPase 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110791Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11231)
DOID:0070154Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:24526)
DOID:0070156Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11231)
Molecular_infoCorresponding_CDSY54G2A.2a
Y54G2A.2b
Y54G2A.2c
Y54G2A.2d
Corresponding_CDS_historyY54G2A.2:wp129
Corresponding_transcriptY54G2A.2a.1
Y54G2A.2b.1
Y54G2A.2c.1
Y54G2A.2d.1
Other_sequence (71)
Associated_featureWBsf660004
WBsf660005
WBsf995777
WBsf228049
WBsf228050
WBsf228051
WBsf228052
Experimental_infoRNAi_resultWBRNAi00112388Inferred_automaticallyRNAi_primary
WBRNAi00112387Inferred_automaticallyRNAi_primary
WBRNAi00057450Inferred_automaticallyRNAi_primary
WBRNAi00085582Inferred_automaticallyRNAi_primary
WBRNAi00112386Inferred_automaticallyRNAi_primary
Expr_patternExpr14263
Expr1026901
Expr1039602
Expr1160883
Expr2009506
Expr2027743
Construct_productWBCnstr00017652
WBCnstr00040692
AntibodyWBAntibody00002439
Microarray_results (29)
Expression_clusterWBPaper00005700:transmembrane_protein
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00035073:mitochondria_protein
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038118:aak-2(gt33)_upregulated
WBPaper00038213:E.coli(LF82)_72h_upregulated
WBPaper00038289:oocyte_protein
WBPaper00040446:insoluble_protein
WBPaper00040965:lipid-droplet_associated_protein
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050698:DEP-1_interacting
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:cytoplasm_specific
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053388:dauer_regulated_Cluster3
WBPaper00053615:SMO-1_target
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053814:25C_downregulated_OP50
WBPaper00055226:ADR-2_target_N2
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00059605:MUT-16_interacting
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061377:MYRF-1_interacting
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:tars-1-AFFX-r2-3026-5_at
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064201:SNA-3_interacting
WBPaper00064871:hypoxia_upregulated_F2
WBPaper00065120:body-muscle-transcriptome
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00036123:Cadmium_regulated
WBPaper00036123:Fluoranthene_regulated
WBPaper00041174:environmental
WBPaper00041174:environmental_prime
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_allantoin_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
Interaction (14)
Map_infoMapIVPosition-6.73979
PositivePositive_cloneY54G2AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00042415
WBPaper00043241
WBPaper00055090
WBPaper00056132
WBPaper00060244
WBPaper00064947
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene