WormBase Tree Display for Gene: WBGene00022134
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WBGene00022134 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | hrpu-2 | Person_evidence | WBPerson1824 | |||||
Sequence_name | Y71G10AL.1 | ||||||||
Molecular_name | Y71G10AL.1a | ||||||||
Y71G10AL.1a.1 | |||||||||
CE40883 | |||||||||
Y71G10AL.1b | |||||||||
CE40884 | |||||||||
Y71G10AL.1b.1 | |||||||||
Other_name | Y71G10AL.b | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y71G10AR.c | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y71G10AL.1 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | hrpu-2 | ||||||||
DB_info | Database | AceView | gene | 4C963 | |||||
WormQTL | gene | WBGene00022134 | |||||||
WormFlux | gene | WBGene00022134 | |||||||
NDB | locus_tag | CELE_Y71G10AL.1 | |||||||
NCBI | gene | 177011 | |||||||
RefSeq | protein | NM_171284.5 | |||||||
NM_171899.6 | |||||||||
TREEFAM | TREEFAM_ID | TF321135 | |||||||
TrEMBL | UniProtAcc | G4SPY0 | |||||||
G4SPY1 | |||||||||
UniProt_GCRP | UniProtAcc | G4SPY0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 02 Jul 2017 22:54:02 | WBPerson2970 | Name_change | CGC_name | hrpu-2 | ||||
Acquires_merge | WBGene00022136 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hrpu | ||||||||
Allele (529) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP4655 | ||||||||
Ortholog (24) | |||||||||
Structured_description | Automated_description | Enriched in AVK based on RNA-seq studies. Is affected by several genes including daf-2; clk-1; and aak-2 based on microarray; RNA-seq; and proteomic studies. Is affected by seven chemicals including rotenone; stavudine; and Chlorpyrifos based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y71G10AL.1a | |||||||
Y71G10AL.1b | |||||||||
Corresponding_CDS_history | Y71G10AL.1:wp82 | ||||||||
Y71G10AL.1a:wp174 | |||||||||
Y71G10AL.1b:wp131 | |||||||||
Y71G10AL.1b:wp174 | |||||||||
Corresponding_transcript | Y71G10AL.1a.1 | ||||||||
Y71G10AL.1b.1 | |||||||||
Associated_feature (21) | |||||||||
Experimental_info | RNAi_result | WBRNAi00069271 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00069270 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012396 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00069272 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058187 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058189 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00069269 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037785 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr13443 | ||||||||
Expr13444 | |||||||||
Expr1027656 | |||||||||
Expr1039744 | |||||||||
Expr1161606 | |||||||||
Expr2008294 | |||||||||
Expr2026534 | |||||||||
Drives_construct | WBCnstr00039537 | ||||||||
Construct_product | WBCnstr00039538 | ||||||||
Microarray_results (31) | |||||||||
Expression_cluster (110) | |||||||||
Interaction (17) | |||||||||
Map_info | Map | IV | Position | -9.32184 | |||||
Positive | Positive_clone | Y71G10AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00053447 | ||||||||
WBPaper00061547 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |