WormBase Tree Display for Gene: WBGene00022729
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| WBGene00022729 | SMap | S_parent | Sequence | ZK402 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | ZK402.2 | |||||||
| Molecular_name | ZK402.2 | ||||||||
| ZK402.2.1 | |||||||||
| CE05074 | |||||||||
| Other_name | CELE_ZK402.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ZK402.2 | ||||||||
| DB_info | Database | AceView | gene | XC21 | |||||
| WormQTL | gene | WBGene00022729 | |||||||
| WormFlux | gene | WBGene00022729 | |||||||
| NDB | locus_tag | CELE_ZK402.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022729|UniProtKB=Q23479 | |||||||
| family | PTHR23362 | ||||||||
| NCBI | gene | 191312 | |||||||
| RefSeq | protein | NM_075862.1 | |||||||
| TrEMBL | UniProtAcc | Q23479 | |||||||
| UniProt_GCRP | UniProtAcc | Q23479 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele | WBVar02121341 | ||||||||
| WBVar02151111 | |||||||||
| WBVar01119611 | |||||||||
| WBVar01499636 | |||||||||
| WBVar01600485 | |||||||||
| WBVar00494501 | |||||||||
| WBVar00494502 | |||||||||
| WBVar00494503 | |||||||||
| WBVar00304719 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00039293 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
| WBGene00023828 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Paralog (35) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including sir-2.1; clk-1; and pgl-1 based on tiling array; microarray; and RNA-seq studies. Is predicted to encode a protein with the following domains: SPK domain and Domain of unknown function (DUF545). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK402.2 | |||||||
| Corresponding_transcript | ZK402.2.1 | ||||||||
| Associated_feature | WBsf1004030 | ||||||||
| WBsf1022266 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00022001 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021999 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082475 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021998 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082672 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059409 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027243 | ||||||||
| Expr1040049 | |||||||||
| Expr1162838 | |||||||||
| Drives_construct | WBCnstr00024019 | ||||||||
| Construct_product | WBCnstr00024019 | ||||||||
| Microarray_results | SMD_ZK402.2 | ||||||||
| A_12_P113128 | |||||||||
| Aff_ZK402.2 | |||||||||
| GPL3518_CE05074 | |||||||||
| GPL8304_CE_WBGene00022729_A | |||||||||
| GPL8673_ZK402_2P00059 | |||||||||
| GPL8673_ZK402_2P00244 | |||||||||
| GPL9450_ZK402.2 | |||||||||
| cea2.i.59999 | |||||||||
| Expression_cluster (26) | |||||||||
| SAGE_tag | SAGE:gagttcggtaaaaaaga | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaaacttttg | Strand | Antisense | |||||||
| SAGE:tttggcgcaa | Strand | Antisense | |||||||
| SAGE:gatcaactggacaatta | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:agagaaaagg | Strand | Antisense | |||||||
| Interaction | WBInteraction000307896 | ||||||||
| WBInteraction000409082 | |||||||||
| Map_info | Positive | Positive_clone | ZK402 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -18.1659 | |||||||
| Method | Gene |
