WormBase Tree Display for Gene: WBGene00023452
expand all nodes | collapse all nodes | view schema
WBGene00023452 | SMap | S_parent | Sequence | D1007 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | mir-353 | Person_evidence | WBPerson18 | |||||
Sequence_name | D1007.17 | ||||||||
Molecular_name | D1007.17 | ||||||||
D1007.17a | |||||||||
Other_name | cel-mir-353 | Remark | miRBase V21 import | ||||||
CELE_D1007.17 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | mir-353 | ||||||||
DB_info | Database | miRBase | acc | MI0000752 | |||||
NDB | locus_tag | CELE_D1007.17 | |||||||
NCBI | gene | 3565490 | |||||||
RefSeq | protein | NR_002333.2 | |||||||
RNAcentral | URSid | URS000022AB06 | |||||||
URS00004A5363 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 22 Jul 2004 12:37:16 | WBPerson1849 | Event | Created | |||
2 | 26 Jul 2004 10:44:31 | WBPerson1971 | Name_change | CGC_name | mir-353 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele | WBVar01499919 | ||||||||
WBVar01499786 | |||||||||
WBVar01499985 | |||||||||
WBVar00323167 | |||||||||
WBVar01498959 | |||||||||
RNASeq_FPKM (74) | |||||||||
Structured_description | Concise_description | mir-353 encodes a microRNA, a small non-protein coding RNA and seems to have a potential ortholog in C. briggsae; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-353 is unknown. | Paper_evidence | WBPaper00024441 | |||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 28 Feb 2005 00:00:00 | ||||||||
Automated_description | Is affected by several genes including daf-12; prg-1; and alg-1 based on tiling array; RNA-seq; and microarray studies. Is affected by multi-walled carbon nanotube and nicotine based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_transcript | D1007.17 | |||||||
D1007.17a | |||||||||
Experimental_info | RNAi_result (20) | ||||||||
Expression_cluster (14) | |||||||||
Map_info | Positive | Inside_rearr | nDf61 | ||||||
Positive_clone | D1007 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | Pos_neg_data | 10934 | |||||||
Interpolated_map_position | I | -1.04156 | |||||||
Reference | WBPaper00024441 | ||||||||
WBPaper00031335 | |||||||||
Remark | The annotation of cel-mir-353 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21. | ||||||||
Method | Gene |