WormBase Tree Display for Gene: WBGene00023491
expand all nodes | collapse all nodes | view schema
| WBGene00023491 | SMap | S_parent | Sequence | C17G1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tsp-21 | Person_evidence | WBPerson522 | |||||
| Sequence_name | C17G1.8 | ||||||||
| Molecular_name | C17G1.8 | ||||||||
| C17G1.8.1 | |||||||||
| CE42559 | |||||||||
| C17G1.8.2 | |||||||||
| Other_name | CELE_C17G1.8 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | tsp-21 | ||||||||
| DB_info | Database | AceView | gene | XK557 | |||||
| WormFlux | gene | WBGene00023491 | |||||||
| NDB | locus_tag | CELE_C17G1.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00023491|UniProtKB=Q5WRN1 | |||||||
| family | PTHR19282 | ||||||||
| NCBI | gene | 259720 | |||||||
| RefSeq | protein | NM_001383631.2 | |||||||
| SwissProt | UniProtAcc | Q5WRN1 | |||||||
| UniProt_GCRP | UniProtAcc | Q5WRN1 | |||||||
| OMIM | gene | 613138 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 24 Aug 2004 09:31:59 | WBPerson1846 | Event | Created | |||
| 2 | 29 Aug 2008 15:37:08 | WBPerson2970 | Name_change | CGC_name | tsp-21 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tsp | ||||||||
| Allele (82) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (42) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Automated_description | Enables identical protein binding activity. Involved in positive regulation of signal transduction; regulation of growth; and regulation of mesodermal cell fate specification. Located in basolateral plasma membrane. Expressed in several structures, including M lineage cell; gonad; intestine; rectal epithelium; and vulva. Used to study cancer. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 5. Is an ortholog of human CD53 (CD53 molecule) and TSPAN12 (tetraspanin 12). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:162 | Homo sapiens | Paper_evidence | WBPaper00046810 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 15 Jul 2015 00:00:00 | ||||||||
| Potential_model | DOID:0111408 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21641) | |||||
| Models_disease_in_annotation | WBDOannot00000355 | ||||||||
| Molecular_info | Corresponding_CDS | C17G1.8 | |||||||
| Corresponding_CDS_history | C17G1.8:wp190 | ||||||||
| Corresponding_transcript | C17G1.8.1 | ||||||||
| C17G1.8.2 | |||||||||
| Other_sequence | CBC12790_1 | ||||||||
| Oden_isotig20087 | |||||||||
| EX557416.1 | |||||||||
| ACC20644_1 | |||||||||
| CRC05977_1 | |||||||||
| EX827951.1 | |||||||||
| CR10547 | |||||||||
| Associated_feature | WBsf662382 | ||||||||
| WBsf663211 | |||||||||
| WBsf663212 | |||||||||
| WBsf982222 | |||||||||
| WBsf1006573 | |||||||||
| WBsf236216 | |||||||||
| Experimental_info | Expr_pattern | Expr12377 | |||||||
| Expr12378 | |||||||||
| Expr1010952 | |||||||||
| Expr1040139 | |||||||||
| Expr1144878 | |||||||||
| Expr2017551 | |||||||||
| Expr2035689 | |||||||||
| Drives_construct | WBCnstr00020524 | ||||||||
| WBCnstr00023858 | |||||||||
| Construct_product | WBCnstr00020524 | ||||||||
| WBCnstr00023858 | |||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (67) | |||||||||
| Interaction | WBInteraction000525308 | ||||||||
| WBInteraction000525309 | |||||||||
| WBInteraction000551376 | |||||||||
| WBInteraction000551377 | |||||||||
| WBInteraction000551378 | |||||||||
| Map_info | Map | X | Position | 1.7312 | |||||
| Positive | Positive_clone | C17G1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00046810 | |||||||||
| WBPaper00048314 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
