WormBase Tree Display for Gene: WBGene00023578

WBGene00023578 SMap: S_parent: Sequence: cb25.fpc0003
  Identity: Version: 2
    Name: CGC_name: Cbr-nhr-27 From_analysis: Inferred_from_orthology
      Sequence_name: CBG00089
      Molecular_name: CBG00089
        CBG00089.1
        CBP36764
      Other_name: CBG_00089 Accession_evidence: NDB HE601409
      Public_name: Cbr-nhr-27
    DB_info: Database: NDB locus_tag CBG_00089
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:53 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:05 WBPerson2970 Name_change: CGC_name: Cbr-nhr-27
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000002 0.063854 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.07418 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.117382 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.082302 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.095781 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.137647 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0.027262 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.054523 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        0.018174 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 0.205702 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.411403 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.093765 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.178006 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.184305 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.200558 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.141325 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        0.177984 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.392627 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.144778 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.148231 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        0.170546 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 0.082772 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.040722 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.064897 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.071357 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.101991 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0.116873 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 0.013861 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.014174 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.027721 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.028975 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
            RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.028348 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.030414 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.035882 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        0.089908 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0.028922 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.14461 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        0.024102 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0.040722 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.10679 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.064352 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.104927 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00126947
      00126948
      00126949
      00126950
    Ortholog (18)
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-27. In C. elegans, nhr-27 is involved in determination of adult lifespan. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG00089
    Corresponding_CDS_history: CBG00089:bp194
    Corresponding_transcript: CBG00089.1
  Experimental_info: Expr_pattern: Expr1056661
    Microarray_results: GPL8303_CB6_WBGene00023578_A
      GPL8303_CB6_WBGene00023578_B
      GPL14143_CBG00089_583-642_0.813_24_B
      GPL14143_CBG00089_801-860_0.855_4_A
      GPL14143_CBG00089_933-992_0.679_123_C
  Method: Gene