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WormBase Tree Display for Gene: WBGene00024212

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Name Class

WBGene00024212SMapS_parentSequencecb25.fpc0022b
IdentityVersion2
NameCGC_nameCbr-ref-1From_analysisInferred_from_orthology
Sequence_nameCBG00896
Molecular_nameCBG00896
CBG00896.1
CBP34280
Other_nameCBG_00896Accession_evidenceNDBHE600951
Public_nameCbr-ref-1
DB_infoDatabaseNDBlocus_tagCBG_00896
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-ref-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classref
AlleleWBVar00041842
WBVar00041847
RNASeq_FPKMWBls:00000020.425158From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.652643From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.54928From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.57003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.508634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.580639From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.03912From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000313.9723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
15.7466From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
17.521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
11.2486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
14.2473From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000413.7238From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
15.9823From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
18.2407From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
16.6047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
18.8605From_analysisRNASeq.briggsae.WBls:0000004.control_mean
20.7557From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
24.9777From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.111778From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.523496From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.45871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.078161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
0.094969From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.412162From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350.523738From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.493007From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.504821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.04152From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.57822From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.96498From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.28387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.307196From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.597184From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.613403From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.639263From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.665123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.803016From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.340827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.593307From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.830278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.30563From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.345092From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.422085From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.422383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.03732From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.383738From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.443692From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.551728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.613403From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.11809From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.615061From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.37687From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00127556
Ortholog (19)
ParalogWBGene00031871Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable protein dimerization activity. Is an ortholog of C. elegans ref-1. In C. elegans, ref-1 is involved in several processes, including epidermal cell fate specification; negative regulation of transcription by RNA polymerase II; and nematode male tail tip morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00896
Corresponding_CDS_historyCBG00896:bp194
Corresponding_transcriptCBG00896.1
Other_sequenceCRC08388_1
CR00943
Experimental_infoExpr_patternExpr1066113
Microarray_resultsGPL8303_CB6_WBGene00024212_A
GPL8303_CB6_WBGene00024212_B
GPL14143_CBG00896_23-82_0.759_40_C
GPL14143_CBG00896_208-267_0.776_26_A
GPL14143_CBG00896_513-572_0.828_4_B
ReferenceWBPaper00031365
MethodGene