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WormBase Tree Display for Gene: WBGene00024280

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Name Class

WBGene00024280SMapS_parentSequencecb25.fpc0022b
IdentityVersion2
NameCGC_nameCbr-plx-2From_analysisInferred_from_orthology
Sequence_nameCBG00979
Molecular_nameCBG00979
CBG00979.1
CBP41590
Other_nameCBG_00979Accession_evidenceNDBHE600951
Public_nameCbr-plx-2
DB_infoDatabaseNDBlocus_tagCBG_00979
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-plx-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classplx
AlleleWBVar00065832
WBVar00065837
WBVar00065812
WBVar00065817
WBVar00065822
WBVar00065827
RNASeq_FPKMWBls:00000022.28842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.76461From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.21192From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.79349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.77088From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.25017From_analysisRNASeq.briggsae.WBls:0000002.control_median
3.26618From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000032.39937From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.19591From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
3.99246From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
3.48801From_analysisRNASeq.briggsae.WBls:0000003.control_mean
4.07221From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000431.4552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
33.694From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
35.9327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
32.4566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
32.4773From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
33.3704From_analysisRNASeq.briggsae.WBls:0000004.control_mean
34.5303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271.01096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
12.0318From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.84327From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.29534From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.03969From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.78054From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.23612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000355.92596From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.60285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.8526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.48679From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.50575From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.12099From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.44657From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.595266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.780319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.805946From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.831573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.27655From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.89904From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.05835From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.28513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.42846From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.17944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.767774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.820523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.882992From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.884642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.888214From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.08514From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.705215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.851758From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.857714From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001012.84327From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.35449From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.87116From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.15772From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00127617
00127618
Ortholog (30)
ParalogWBGene00034652Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable semaphorin receptor activity. Predicted to be involved in semaphorin-plexin signaling pathway. Is an ortholog of C. elegans plx-2. In C. elegans, plx-2 is involved in several processes, including axonal fasciculation; nematode larval development; and nematode male tail tip morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00979
Corresponding_CDS_historyCBG00979:bp194
CBG00979:bp206
CBG00979:bp218
CBG00979:bp255
Corresponding_transcriptCBG00979.1
Other_sequenceDviv_isotig22187
FC552303.1
ACC17590_1
FC551755.1
CRC01711_1
JI164274.1
Acan_isotig12889
Dviv_isotig33737
Oden_isotig23212
Experimental_infoExpr_patternExpr1069227
Microarray_resultsGPL8303_CB6_WBGene00024280_A
GPL14143_CBG00979_2264-2323_0.811_1_C
GPL14143_CBG00979_5125-5184_0.787_60_B
GPL14143_CBG00979_5324-5383_0.800_13_A
MethodGene