WormBase Tree Display for Gene: WBGene00024642

WBGene00024642 SMap: S_parent: Sequence: cb25.fpc0023
  Identity: Version: 2
    Name: CGC_name: Cbr-nhr-16 From_analysis: Inferred_from_orthology
      Sequence_name: CBG01395
      Molecular_name: CBG01395
        CBG01395.1
        CBP00339
      Other_name: CBG_01395 Accession_evidence: NDB HE601256
      Public_name: Cbr-nhr-16
    DB_info: Database: NDB locus_tag CBG_01395
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:54 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cbr-nhr-16
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000002 1.05803 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        2.11889 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        4.21912 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        9.48043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        1.44507 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        1.78198 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        3.5256 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.69756 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        1.60337 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        2.50919 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        1.06892 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 10.1251 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        9.69074 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        9.90792 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        6.36913 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        6.60974 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        8.21676 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        8.28908 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.234592 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        11.4856 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.78166 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        4.83395 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.23682 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        2.50924 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        4.18467 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 1.46627 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.7179 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        0.921755 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        1.95613 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        2.76258 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        2.9905 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        6.42016 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 1.68969 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        1.73955 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        2.12479 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        2.32084 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.51003 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        3.34411 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        2.78936 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.86253 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        3.21503 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        4.23776 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.26559 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        2.43951 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        2.5628 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        3.04563 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        3.28003 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1.29131 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        2.10321 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        2.50115 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 2.51003 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        3.46359 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2.53642 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        3.52995 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00128004
      00128005
      00128006
      00128007
    Ortholog (59)
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-16. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG01395
    Corresponding_transcript: CBG01395.1
  Experimental_info: Expr_pattern: Expr1063813
    Microarray_results: GPL8303_CB6_WBGene00024642_A
      GPL14143_CBG01395_772-831_0.914_4_B
      GPL14143_CBG01395_822-881_0.912_6_C
      GPL14143_CBG01395_960-1019_0.918_2_A
  Method: Gene