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WormBase Tree Display for Gene: WBGene00024707

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Name Class

WBGene00024707SMapS_parentSequencecb25.fpc0024
IdentityVersion3
NameCGC_nameCbr-smk-1From_analysisInferred_from_orthology
Sequence_nameCBG01474
Molecular_nameCBG01474a
CBG01474a.1
CBP46019
CBG01474b
CBP43358
CBG01474b.1
Other_nameCBG_01474Accession_evidenceNDBHE601420
Public_nameCbr-smk-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:54WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-smk-1
324 Jul 2008 11:56:40WBPerson1847EventAcquires_mergeWBGene00024708
Acquires_mergeWBGene00024708
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsmk
RNASeq_FPKMWBls:0000002122.71From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
46.9568From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
75.3963From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
81.6877From_analysisRNASeq.briggsae.WBls:0000002.control_mean
67.929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
71.6627From_analysisRNASeq.briggsae.WBls:0000002.control_median
78.248From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003216.872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
289.319From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
361.767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
263.086From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
280.575From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004114.818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
115.521From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
116.223From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
111.391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
117.536From_analysisRNASeq.briggsae.WBls:0000004.control_mean
121.236From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
124.011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002720.9105From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
31.9453From_analysisRNASeq.briggsae.WBls:0000027.control_mean
67.9664From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.9591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
102.853From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
44.4384From_analysisRNASeq.briggsae.WBls:0000027.control_median
49.6722From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003573.3822From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003818.2659From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
44.5063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
57.0092From_analysisRNASeq.briggsae.WBls:0000038.control_mean
60.1559From_analysisRNASeq.briggsae.WBls:0000038.control_median
75.8056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
89.4591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:0000041132.183From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
138.198From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
141.335From_analysisRNASeq.briggsae.WBls:0000041.control_mean
142.111From_analysisRNASeq.briggsae.WBls:0000041.control_median
146.025From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
148.936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
129.887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
140.815From_analysisRNASeq.briggsae.WBls:0000041.control_mean
149.66From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
47.9037From_analysisRNASeq.briggsae.WBls:0000063.control_mean
56.9034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
57.6318From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
58.6085From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
66.3748From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
51.3888From_analysisRNASeq.briggsae.WBls:0000063.control_mean
58.1202From_analysisRNASeq.briggsae.WBls:0000063.control_median
68.8141From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010173.3822From_analysisRNASeq.briggsae.total_over_all_stages.control_median
87.6277From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
76.8508From_analysisRNASeq.briggsae.total_over_all_stages.control_median
96.844From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (34)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: PH-like domain superfamily; Phosphatase 4 regulatory subunit 3; Domain of unknown function DUF625; and Armadillo-type fold. Is an ortholog of C. elegans smk-1. In C. elegans, smk-1 is involved in several processes, including defense response to bacterium; negative regulation of mitotic DNA damage checkpoint; and response to radiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG01474a
CBG01474b
Corresponding_CDS_historyCBG01474:bp194
CBG01474:bp255
Corresponding_transcriptCBG01474a.1
CBG01474b.1
Other_sequence (32)
Experimental_infoExpr_patternExpr1052415
Microarray_resultsGPL8303_CB6_WBGene00024707_A
GPL8303_CB6_WBGene00024708_A
GPL8303_CB6_WBGene00024708_B
GPL14143_CBG01474_2593-2652_0.904_18_B
GPL14143_CBG01474_2718-2777_0.895_27_A
GPL14143_CBG01474_3307-3366_0.962_3_C
MethodGene