WormBase Tree Display for Gene: WBGene00025136

WBGene00025136 SMap: S_parent: Sequence: cb25.fpc0045
  Identity: Version: 5
    Name: CGC_name: Cbr-unc-58 From_analysis: Inferred_from_orthology
      Sequence_name: CBG01980
      Molecular_name (18)
      Other_name: CBG_01980 Accession_evidence: NDB HE601451
        CBG_01983
        CBG_01982
        CBG_27485
      Public_name: Cbr-unc-58
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:54 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-unc-58
        3 31 Aug 2016 10:29:44 WBPerson4025 Event: Acquires_merge: WBGene00025138
        4 31 Aug 2016 10:29:44 WBPerson4025 Event: Acquires_merge: WBGene00025137
        5 31 Aug 2016 10:29:44 WBPerson4025 Event: Acquires_merge: WBGene00088899
      Acquires_merge: WBGene00025138
        WBGene00025137
        WBGene00088899
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    Allele (11)
    RNASeq_FPKM: WBls:0000002 4.71956 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        5.93461 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        5.98664 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        7.30574 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        2.98295 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        5.23571 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        5.32709 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 0.214433 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.369491 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.52455 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0.428494 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0.5465 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 2.40702 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        2.6523 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        2.89758 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        2.93202 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        3.02523 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        3.39925 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        3.49028 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 1.05546 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        13.4215 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        4.37028 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        6.28241 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        15.4239 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        8.56779 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        8.89589 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 8.06913 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.764389 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        11.1796 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        4.5663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        4.76295 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        4.9596 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        5.36747 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 0.334193 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.527991 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.565526 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.603061 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.936739 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.28171 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        1.1142 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.20201 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        1.62534 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        1.83977 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0.55663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.714383 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0.723989 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.13413 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1.2148 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.883307 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.924257 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        1.6799 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 2.40702 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        4.31621 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2.6523 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        4.18658 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00128539
      00128540
      00128541
    Ortholog: WBGene00006792 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00063130 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142577 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00125641 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00177718 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00109262 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00160926 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00184015 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00109255 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g11756 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14042 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9818 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17685 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20570 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25070 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12710 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1841 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g5687 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g15907 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00262.g8071 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-unc-58 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13666 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00147.g5613 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01385 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023521 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12851 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5859 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0065710 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00225885 Brugia malayi From_analysis: WormBase-Compara
      chrX_pilon.g19850 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241052 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00109263 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00266442 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288331 Trichuris muris From_analysis: WormBase-Compara
    Paralog (45)
    Structured_description: Automated_description: Predicted to enable potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-58. In C. elegans, unc-58 is involved in several processes, including muscle contraction; parturition; and regulation of muscle contraction. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG01980a
      CBG01980b
      CBG01980c
      CBG01980d
      CBG01980e
      CBG01980f
    Corresponding_CDS_history: CBG01980:bp194
      CBG01980:bp255
    Corresponding_transcript (6)
    Other_sequence (32)
  Experimental_info: Expr_pattern: Expr1064008
    Microarray_results: GPL8303_CB6_WBGene00025136_A
      GPL8303_CB6_WBGene00025136_B
      GPL8303_CB6_WBGene00025137_A
      GPL8303_CB6_WBGene00025137_B
      GPL14143_CBG01980_999-1058_0.770_25_C
      GPL14143_CBG01980_1229-1288_0.584_135_B
      GPL14143_CBG01980_1331-1390_0.773_23_A
      GPL14143_CBG27485_423-482_0.717_66_A
  Method: Gene