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WormBase Tree Display for Gene: WBGene00025160

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Name Class

WBGene00025160SMapS_parentSequencecb25.fpc0045
IdentityVersion2
NameCGC_nameCbr-osm-5From_analysisInferred_from_orthology
Sequence_nameCBG02013
Molecular_nameCBG02013
CBG02013.1
CBP00463
Other_nameCBG_02013Accession_evidenceNDBHE601451
Public_nameCbr-osm-5
DB_infoDatabaseNDBlocus_tagCBG_02013
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:54WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-osm-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classosm
AlleleWBVar00141653
WBVar00141651
WBVar00141652
RNASeq_FPKMWBls:00000021.19069From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.33679From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.39707From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.42261From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.518532From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.13223From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.29388From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.475402From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.950804From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.404876From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.451893From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000044.19257From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
4.9727From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
5.75283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
3.70965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
4.0004From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
4.2835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
4.38779From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.129471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.359404From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.79512From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.89648From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.6068From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.80989From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.85419From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.74414From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.033123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.8641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.89173From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.91936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.11826From_analysisRNASeq.briggsae.WBls:0000038.control_mean
4.65647From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.094966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.161522From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.237064From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.312606From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.410914From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.07456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.502578From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.562171From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.69255From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.03682From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.280096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.320776From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.423081From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.458151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.05638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.389464From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.438974From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.518443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.07456From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.07429From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.06547From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.05719From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (31)
ParalogWBGene00030448Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031404Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032126Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035509Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036497Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038300Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00088056Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Tetratricopeptide-like helical domain superfamily and Tetratricopeptide repeat. Is an ortholog of C. elegans osm-5. In C. elegans, osm-5 is involved in several processes, including dauer entry; locomotory exploration behavior; and non-motile cilium assembly.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02013
Corresponding_CDS_historyCBG02013:bp194
CBG02013:bp255
Corresponding_transcriptCBG02013.1
Other_sequence (15)
Experimental_infoExpr_patternExpr1061866
Microarray_resultsGPL8303_CB6_WBGene00025160_A
GPL8303_CB6_WBGene00025160_B
GPL8303_CB6_WBGene00025161_B
GPL14143_CBG02013_1830-1889_0.804_9_C
GPL14143_CBG02013_2205-2264_0.774_49_B
GPL14143_CBG02013_2535-2594_0.789_20_A
ReferenceWBPaper00063946
MethodGene