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WormBase Tree Display for Gene: WBGene00025576

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Name Class

WBGene00025576SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-vrk-1From_analysisInferred_from_orthology
Sequence_nameCBG02540
Molecular_nameCBG02540
CBG02540.1
CBP06284
Other_nameCBG_02540Accession_evidenceNDBHE601438
Public_nameCbr-vrk-1
DB_infoDatabaseNDBlocus_tagCBG_02540
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vrk-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvrk
RNASeq_FPKMWBls:000000227.6816From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
29.461From_analysisRNASeq.briggsae.WBls:0000002.control_mean
30.1045From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
30.597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
30.3507From_analysisRNASeq.briggsae.WBls:0000002.control_median
31.5204From_analysisRNASeq.briggsae.WBls:0000002.control_mean
37.6985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003107.114From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
129.1From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
85.1284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
102.591From_analysisRNASeq.briggsae.WBls:0000003.control_mean
93.5445From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000441.9096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
42.6521From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
43.3946From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
39.3085From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
43.6667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
43.7403From_analysisRNASeq.briggsae.WBls:0000004.control_mean
50.4223From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.593958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
11.2237From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.48284From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.4335From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.344From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
5.91112From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.91342From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:00000359.63599From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.1382From_analysisRNASeq.briggsae.WBls:0000038.control_mean
12.7775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
13.0652From_analysisRNASeq.briggsae.WBls:0000038.control_median
13.3528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
14.4136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.00878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.0552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
53.2239From_analysisRNASeq.briggsae.WBls:0000041.control_mean
64.345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
64.4715From_analysisRNASeq.briggsae.WBls:0000041.control_median
64.5979From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
71.8973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
20.3275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
24.266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
42.9148From_analysisRNASeq.briggsae.WBls:0000041.control_mean
44.3055From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006314.7951From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
14.7964From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
14.9538From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
18.8897From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
20.0082From_analysisRNASeq.briggsae.WBls:0000063.control_mean
36.6062From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
16.9217From_analysisRNASeq.briggsae.WBls:0000063.control_median
20.7967From_analysisRNASeq.briggsae.WBls:0000063.control_mean
24.739From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010114.9538From_analysisRNASeq.briggsae.total_over_all_stages.control_median
28.5863From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
19.6086From_analysisRNASeq.briggsae.total_over_all_stages.control_median
30.8768From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00128971
00128972
00128973
Ortholog (34)
Paralog (84)
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and protein kinase activity. Is an ortholog of C. elegans vrk-1. In C. elegans, vrk-1 is involved in several processes, including cell fate specification; gonad development; and regulation of fibroblast growth factor receptor signaling pathway.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02540
Corresponding_CDS_historyCBG02540:bp194
Corresponding_transcriptCBG02540.1
Other_sequence (12)
Experimental_infoExpr_patternExpr1056739
Microarray_resultsGPL8303_CB6_WBGene00025576_A
GPL8303_CB6_WBGene00025576_B
GPL14143_CBG02540_368-427_0.755_37_C
GPL14143_CBG02540_602-661_0.798_5_B
GPL14143_CBG02540_1497-1556_0.805_3_A
MethodGene