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WormBase Tree Display for Gene: WBGene00025878

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Name Class

WBGene00025878SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-pigm-1From_analysisInferred_from_orthology
Sequence_nameCBG02919
Molecular_nameCBG02919
CBG02919.1
CBP46644
Other_nameCBG_02919Accession_evidenceNDBHE601438
Public_nameCbr-pigm-1
DB_infoDatabaseNDBlocus_tagCBG_02919
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
208 Feb 2019 15:42:26WBPerson1983Name_changeCGC_nameCbr-pigm-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpigm
RNASeq_FPKMWBls:000000219.9418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
28.9148From_analysisRNASeq.briggsae.WBls:0000002.control_mean
31.996From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
34.8067From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
30.3096From_analysisRNASeq.briggsae.WBls:0000002.control_mean
33.245From_analysisRNASeq.briggsae.WBls:0000002.control_median
34.494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000387.2189From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
87.2441From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
87.2693From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
101.814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
92.1007From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000457.93From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
63.6419From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
69.3539From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
54.0525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
61.6099From_analysisRNASeq.briggsae.WBls:0000004.control_mean
61.9555From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
64.7574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.80051From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.4249From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
15.9452From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.05687From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.78454From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.0787From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.14418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000359.00614From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.0383From_analysisRNASeq.briggsae.WBls:0000038.control_median
11.5989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.2587From_analysisRNASeq.briggsae.WBls:0000038.control_mean
43.3655From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.59257From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
8.47769From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004139.7411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
53.067From_analysisRNASeq.briggsae.WBls:0000041.control_mean
56.7481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
57.167From_analysisRNASeq.briggsae.WBls:0000041.control_median
57.5859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
58.1928From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
41.2448From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
45.3093From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
49.8037From_analysisRNASeq.briggsae.WBls:0000041.control_mean
51.0287From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006325.656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
26.9123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
29.7758From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
30.9176From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
32.9378From_analysisRNASeq.briggsae.WBls:0000063.control_mean
51.4275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
30.3467From_analysisRNASeq.briggsae.WBls:0000063.control_median
31.9772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
32.7777From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010126.9123From_analysisRNASeq.briggsae.total_over_all_stages.control_median
31.5131From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
31.9866From_analysisRNASeq.briggsae.total_over_all_stages.control_median
35.6744From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00129295
00129296
00129297
00129298
Ortholog (29)
Structured_descriptionAutomated_descriptionPredicted to enable alpha-1,4-mannosyltransferase activity and glycolipid mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in membrane. Is an ortholog of C. elegans pigm-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02919
Corresponding_CDS_historyCBG02919:bp194
CBG02919:bp255
Corresponding_transcriptCBG02919.1
Other_sequence (26)
Experimental_infoExpr_patternExpr1063825
Microarray_resultsGPL8303_CB6_WBGene00025878_A
GPL8303_CB6_WBGene00025878_C
GPL8303_CB6_WBGene00025878_D
GPL8303_CB6_WBGene00025878_E
GPL14143_CBG02919_381-440_0.789_22_C
GPL14143_CBG02919_475-534_0.773_39_B
GPL14143_CBG02919_714-773_0.828_3_A
MethodGene