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WormBase Tree Display for Gene: WBGene00026572

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Name Class

WBGene00026572SMapS_parentSequencecb25.fpc0071c2
IdentityVersion3
NameCGC_nameCbr-ercc-1From_analysisInferred_from_orthology
Sequence_nameCBG03787
Molecular_nameCBG03787a
CBG03787a.1
CBP42927
CBG03787b
CBP40830
CBG03787c
CBP38802
CBG03787b.1
CBG03787b.2
CBG03787c.1
Other_nameCBG_03787Accession_evidenceNDBHE600906
CBG_25226
Public_nameCbr-ercc-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
201 May 2009 14:49:06WBPerson9133Name_changeCGC_nameCbr-ercc-1
331 Aug 2016 10:29:43WBPerson4025EventAcquires_mergeWBGene00086640
Acquires_mergeWBGene00086640
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classercc
RNASeq_FPKMWBls:000000223.2807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
28.2691From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
29.1286From_analysisRNASeq.briggsae.WBls:0000002.control_mean
35.8359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
32.0525From_analysisRNASeq.briggsae.WBls:0000002.control_median
33.6977From_analysisRNASeq.briggsae.WBls:0000002.control_mean
47.4052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000356.4449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
62.1446From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
67.8444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
65.0011From_analysisRNASeq.briggsae.WBls:0000003.control_mean
70.7141From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000434.2729From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
36.8237From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
39.3746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
33.7127From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
38.9038From_analysisRNASeq.briggsae.WBls:0000004.control_mean
40.1733From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
46.9853From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.274From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.16966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
5.13477From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
6.19281From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.94983From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.17782From_analysisRNASeq.briggsae.WBls:0000027.control_median
9.22088From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003511.8296From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.2612From_analysisRNASeq.briggsae.WBls:0000038.control_mean
12.6037From_analysisRNASeq.briggsae.WBls:0000038.control_median
15.8357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.2031From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.63436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
9.37162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004129.5584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
45.0347From_analysisRNASeq.briggsae.WBls:0000041.control_mean
48.2262From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
48.8134From_analysisRNASeq.briggsae.WBls:0000041.control_median
49.4005From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
52.9538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
41.1915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
44.6604From_analysisRNASeq.briggsae.WBls:0000041.control_mean
46.6321From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
47.4291From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006320.4292From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
21.7816From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
23.7678From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
25.7744From_analysisRNASeq.briggsae.WBls:0000063.control_mean
27.2047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
35.6885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
25.4862From_analysisRNASeq.briggsae.WBls:0000063.control_median
26.2993From_analysisRNASeq.briggsae.WBls:0000063.control_mean
28.9238From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010121.7816From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.7993From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
27.7369From_analysisRNASeq.briggsae.total_over_all_stages.control_median
28.5299From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130092
00130093
00130094
Ortholog (26)
Structured_descriptionAutomated_descriptionPredicted to enable damaged DNA binding activity. Predicted to be involved in DNA repair. Predicted to be located in nucleus. Is an ortholog of C. elegans ercc-1. In C. elegans, ercc-1 is involved in UV-damage excision repair and base-excision repair.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03787a
CBG03787b
CBG03787c
Corresponding_CDS_historyCBG03787:bp194
CBG03787:bp255
Corresponding_transcriptCBG03787a.1
CBG03787b.1
CBG03787b.2
CBG03787c.1
Other_sequence (20)
Experimental_infoExpr_patternExpr1056931
Microarray_resultsGPL8303_CB6_WBGene00026572_A
GPL8303_CB6_WBGene00026572_B
GPL8303_CB6_WBGene00026572_C
GPL14143_CBG03787_97-156_0.907_1_A
GPL14143_CBG03787_346-405_0.754_22_B
GPL14143_CBG03787_633-692_0.821_8_C
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene