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WormBase Tree Display for Gene: WBGene00026742

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Name Class

WBGene00026742SMapS_parentSequencecb25.fpc0071c2
IdentityVersion2
NameCGC_nameCbr-abtm-1From_analysisInferred_from_orthology
Sequence_nameCBG03989
Molecular_nameCBG03989
CBG03989.1
CBP41792
Other_nameCBG_03989Accession_evidenceNDBHE600906
Public_nameCbr-abtm-1
DB_infoDatabaseNDBlocus_tagCBG_03989
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-abtm-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classabtm
RNASeq_FPKMWBls:000000218.585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
24.8135From_analysisRNASeq.briggsae.WBls:0000002.control_mean
25.4936From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
30.3619From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
22.9932From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
24.2434From_analysisRNASeq.briggsae.WBls:0000002.control_median
24.3584From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000315.4728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
16.9319From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
18.391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
18.2679From_analysisRNASeq.briggsae.WBls:0000003.control_mean
20.9398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000419.3749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
19.68From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
19.9852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
17.1513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
18.7799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
19.2688From_analysisRNASeq.briggsae.WBls:0000004.control_mean
21.0529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271.22944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
15.1979From_analysisRNASeq.briggsae.WBls:0000027.control_mean
40.0945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.26979From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.2962From_analysisRNASeq.briggsae.WBls:0000027.control_median
18.4791From_analysisRNASeq.briggsae.WBls:0000027.control_mean
28.3226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003520.0061From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003822.0447From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
23.3568From_analysisRNASeq.briggsae.WBls:0000038.control_median
24.6689From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
25.7775From_analysisRNASeq.briggsae.WBls:0000038.control_mean
46.6609From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.73535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004131.5494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
40.2706From_analysisRNASeq.briggsae.WBls:0000041.control_mean
41.1617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
42.3525From_analysisRNASeq.briggsae.WBls:0000041.control_median
43.5433From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
44.8282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
34.8183From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
35.8234From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
38.4925From_analysisRNASeq.briggsae.WBls:0000041.control_median
38.6207From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006325.5379From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
26.0364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
26.2739From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
29.2045From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
30.5255From_analysisRNASeq.briggsae.WBls:0000063.control_mean
45.5746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
19.9087From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
26.1551From_analysisRNASeq.briggsae.WBls:0000063.control_median
28.756From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010125.109From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
25.4936From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.6112From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.9461From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130329
00130330
00130331
00130332
00130333
Contained_in_operonCBOPA0148
Ortholog (36)
Paralog (29)
Structured_descriptionAutomated_descriptionPredicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans abtm-1. In C. elegans, abtm-1 is involved in intracellular iron ion homeostasis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03989
Corresponding_CDS_historyCBG03989:bp194
CBG03989:bp255
Corresponding_transcriptCBG03989.1
Other_sequence (48)
Experimental_infoExpr_patternExpr1050876
Microarray_resultsGPL8303_CB6_WBGene00026742_A
GPL8303_CB6_WBGene00026742_B
GPL14143_CBG03989_1949-2008_0.907_25_C
GPL14143_CBG03989_2388-2447_0.942_3_A
GPL14143_CBG03989_2478-2537_0.954_1_B
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene