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WormBase Tree Display for Gene: WBGene00026986

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Name Class

WBGene00026986SMapS_parentSequencecb25.fpc0072a
IdentityVersion2
NameCGC_nameCbr-clec-62From_analysisInferred_from_orthology
Sequence_nameCBG04275
Molecular_nameCBG04275
CBG04275.1
CBP29882
Other_nameCBG_04275Accession_evidenceNDBHE600920
Public_nameCbr-clec-62
DB_infoDatabaseNDBlocus_tagCBG_04275
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-clec-62
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
AlleleWBVar00001547
WBVar00001552
RNASeq_FPKMWBls:000000240.1996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
40.3574From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
41.6056From_analysisRNASeq.briggsae.WBls:0000002.control_mean
44.2598From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
42.3086From_analysisRNASeq.briggsae.WBls:0000002.control_median
47.2983From_analysisRNASeq.briggsae.WBls:0000002.control_mean
64.3763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.143522From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.287044From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.095681From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040.361865From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.723731From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.329867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.412064From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.479157From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.527564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002710.4163From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
14.5852From_analysisRNASeq.briggsae.WBls:0000027.control_mean
30.2038From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.13556From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
14.4643From_analysisRNASeq.briggsae.WBls:0000027.control_median
15.567From_analysisRNASeq.briggsae.WBls:0000027.control_mean
18.5123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003515.5422From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.681From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
18.7095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
19.6338From_analysisRNASeq.briggsae.WBls:0000038.control_mean
19.8318From_analysisRNASeq.briggsae.WBls:0000038.control_median
20.9541From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
25.1904From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004116.0497From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
20.6843From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
25.2304From_analysisRNASeq.briggsae.WBls:0000041.control_median
29.7764From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
36.9375From_analysisRNASeq.briggsae.WBls:0000041.control_mean
81.2397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
43.1736From_analysisRNASeq.briggsae.WBls:0000041.control_median
46.8392From_analysisRNASeq.briggsae.WBls:0000041.control_mean
56.5709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
76.7145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006321.3707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
21.3881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
22.3886From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
22.4377From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
23.6554From_analysisRNASeq.briggsae.WBls:0000063.control_mean
30.6919From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
20.6557From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
21.8883From_analysisRNASeq.briggsae.WBls:0000063.control_median
23.1555From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010120.6843From_analysisRNASeq.briggsae.total_over_all_stages.control_median
20.8206From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
19.6826From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.1569From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (49)
Paralog (17)
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: von Willebrand factor, type A; C-type lectin fold; von Willebrand factor type A domain; von Willebrand factor A-like domain superfamily; C-type lectin-like/link domain superfamily; and C-type lectin-like. Is an ortholog of C. elegans clec-62. In C. elegans, clec-62 is involved in innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04275
Corresponding_CDS_historyCBG04275:bp194
Corresponding_transcriptCBG04275.1
Experimental_infoExpr_patternExpr1065705
Microarray_resultsGPL8303_CB6_WBGene00026986_A
GPL8303_CB6_WBGene00026986_B
GPL14143_CBG04275_1096-1155_0.856_1_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene