WormBase Tree Display for Gene: WBGene00027002

WBGene00027002 SMap: S_parent: Sequence: cb25.fpc0072a
  Identity: Version: 2
    Name: CGC_name: Cbr-rpn-5 From_analysis: Inferred_from_orthology
      Sequence_name: CBG04294
      Molecular_name: CBG04294
        CBG04294.1
        CBP01118
      Other_name: CBG_04294 Accession_evidence: NDB HE600920
      Public_name: Cbr-rpn-5
    DB_info: Database: NDB locus_tag CBG_04294
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:56 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-rpn-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpn
    RNASeq_FPKM: WBls:0000002 114.547 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        122.987 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        125.445 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        95.2081 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        116.564 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        122.616 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        122.801 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 128.095 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        136.395 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        144.696 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        143.782 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        158.554 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 68.3226 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        68.3363 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        68.35 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        56.8928 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        62.0949 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        64.6376 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        67.5277 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 17.7869 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        39.4682 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        6.21958 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        94.3982 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        32.2061 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        41.2575 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        46.6252 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 70.2808 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 35.8119 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        56.8993 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        57.4876 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        58.1086 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        58.7296 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        75.5681 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 164.516 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        173.603 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        174.229 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        174.324 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        174.419 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        181.247 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        176.316 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        177.577 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        178.214 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        192.835 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 140.83 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        79.3625 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        79.8488 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        97.1672 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        99.1905 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        99.2798 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        100.733 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        107.998 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        98.1788 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 84.3823 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        93.0241 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        89.3903 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        97.1331 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (39)
    Paralog: WBGene00030218 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Winged helix DNA-binding domain superfamily; 26S proteasome regulatory subunit RPN5 C-terminal domain; PCI domain; 26S Proteasome non-ATPase regulatory subunit 12; Winged helix-like DNA-binding domain superfamily; Proteasome component (PCI) domain; 26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4; and 26S proteasome regulatory subunit RPN5, C-terminal domain. Is an ortholog of C. elegans rpn-5. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG04294
    Corresponding_CDS_history: CBG04294:bp194
    Corresponding_transcript: CBG04294.1
    Other_sequence (80)
  Experimental_info: Expr_pattern: Expr1056709
    Microarray_results: GPL8303_CB6_WBGene00027002_A
      GPL8303_CB6_WBGene00027002_B
      GPL8303_CB6_WBGene00027002_C
      GPL14143_CBG04294_835-894_0.756_59_B
      GPL14143_CBG04294_902-961_0.779_28_C
      GPL14143_CBG04294_1011-1070_0.792_16_A
    Expression_cluster: WBPaper00051425:CB_L1_vs_embryo_downregulated
  Method: Gene