WormBase Tree Display for Gene: WBGene00027004

WBGene00027004 SMap: S_parent: Sequence: cb25.fpc0072a
  Identity: Version: 4
    Name: CGC_name: Cbr-asfl-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG04296
      Molecular_name: CBG04296
        CBG04296.1
        CBP06715
      Other_name: Cbr-asf-1 From_analysis: Inferred_from_orthology
        CBG_04296 Accession_evidence: NDB HE600920
        Cbr-unc-85 From_analysis: Inferred_from_orthology
      Public_name: Cbr-asfl-1
    DB_info: Database: NDB locus_tag CBG_04296
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:56 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 21 Apr 2008 17:10:47 WBPerson2970 Name_change: CGC_name: Cbr-asf-1
        3 05 Jun 2008 15:20:05 WBPerson2970 Name_change: CGC_name: Cbr-asf-1 -> Cbr-unc-85
        4 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbr-asfl-1
                Other_name: Cbr-unc-85
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: asfl
    RNASeq_FPKM: WBls:0000002 125.36 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        128.558 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        173.739 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        73.7827 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        148.952 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        151.148 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        219.727 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 420.098 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        455.159 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        490.219 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        428.849 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        446.389 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 109.928 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        111.863 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        113.798 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        115.97 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        118.998 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        127.258 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        128.037 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 10.7923 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        27.2431 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        30.2651 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        40.6718 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        30.7732 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        35.4684 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        41.3636 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 47.3481 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 29.9423 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        38.847 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        46.3929 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        50.1639 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        53.9389 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        77.9275 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 188.723 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        223.694 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        226.277 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        228.861 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        235.746 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        66.5918 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        104.029 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        159.127 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        163.861 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        95.8408 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 105.34 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        110.854 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        161.568 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        81.1587 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        85.1888 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        87.9328 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        114.124 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        158.043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        99.3934 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 116.989 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        81.1587 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        126.627 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        96.9792 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00130638
      00130639
      00130640
      00130641
      00130642
    Ortholog: WBGene00006817 Caenorhabditis elegans From_analysis: OMA
            WormBase-Compara
      WBGene00007277 Caenorhabditis elegans From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00073184 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00154316 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00144403 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00097763 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00133407 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CSP26.g20766 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g404 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8034 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20056 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g17855 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12408 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g16133 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g338 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18346 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g18349 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00088.g3972 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00127.g5093 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g5102 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold492.g2113 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02946.g28493 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_03778.g31229 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_22711 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_003807 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02442 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g6745 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20223800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00223544 Brugia malayi From_analysis: WormBase-Compara
      chrII_pilon.g4301 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrI_pilon.g1875 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00073181 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00246820 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00102093 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00261010 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00262973 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292579 Trichuris muris From_analysis: WormBase-Compara
      WBGene00297876 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable histone binding activity. Predicted to be involved in nucleosome assembly and nucleosome disassembly. Predicted to be located in nucleus. Is an ortholog of C. elegans asfl-1. In C. elegans, asfl-1 is involved in DNA replication and multicellular organismal reproductive process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG04296
    Corresponding_CDS_history: CBG04296:bp194
    Corresponding_transcript: CBG04296.1
    Other_sequence (31)
  Experimental_info: Expr_pattern: Expr1055038
    Microarray_results: GPL8303_CB6_WBGene00027004_A
      GPL8303_CB6_WBGene00027004_B
      GPL8303_CB6_WBGene00027004_C
      GPL14143_CBG04296_31-90_0.811_14_C
      GPL14143_CBG04296_214-273_0.556_101_B
      GPL14143_CBG04296_302-361_0.777_23_A
  Method: Gene