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WormBase Tree Display for Gene: WBGene00027398

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Name Class

WBGene00027398SMapS_parentSequencecb25.fpc0090
IdentityVersion2
NameCGC_nameCbr-nhr-53From_analysisInferred_from_orthology
Sequence_nameCBG04789
Molecular_nameCBG04789a
CBG04789a.1
CBP46659
CBG04789b
CBP40074
CBG04789b.1
Other_nameCBG_04789Accession_evidenceNDBHE601135
Public_nameCbr-nhr-53
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-nhr-53
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:000000214.2313From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.5161From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
19.2277From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.95007From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
11.6079From_analysisRNASeq.briggsae.WBls:0000002.control_mean
11.7331From_analysisRNASeq.briggsae.WBls:0000002.control_median
3.73766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000037.26452From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
7.31395From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
7.36339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
7.22525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
7.28439From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000414.2214From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
15.2228From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
16.2242From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
12.8434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
14.1518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
15.6241From_analysisRNASeq.briggsae.WBls:0000004.control_mean
20.6796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.09389From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
16.6246From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.86939From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
45.9105From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
24.2892From_analysisRNASeq.briggsae.WBls:0000027.control_mean
24.3899From_analysisRNASeq.briggsae.WBls:0000027.control_median
47.2829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003515.4351From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.522801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
10.1214From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
13.8498From_analysisRNASeq.briggsae.WBls:0000038.control_median
14.051From_analysisRNASeq.briggsae.WBls:0000038.control_mean
17.5782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
27.9817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000412.13709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.29523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
4.04838From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.17525From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.80153From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
6.46715From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
10.8768From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.73416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
5.05199From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630.653515From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.46771From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.64878From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.38222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2.65401From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
10.7961From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
2.0155From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.02244From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010110.736From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.36339From_analysisRNASeq.briggsae.total_over_all_stages.control_median
11.6229From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.42402From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00130957
00130958
00130959
00130960
Contained_in_operonCBOPA0097
Ortholog (25)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-53.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04789a
CBG04789b
Corresponding_CDS_historyCBG04789:bp194
CBG04789:bp255
Corresponding_transcriptCBG04789a.1
CBG04789b.1
Other_sequenceCR10232
CR10231
CRC01542_1
HCC04750_2
Experimental_infoExpr_patternExpr1060909
Microarray_resultsGPL8303_CB6_WBGene00027398_A
GPL14143_CBG04789_850-909_0.899_17_C
GPL14143_CBG04789_898-957_0.936_3_B
GPL14143_CBG04789_1085-1144_0.954_1_A
MethodGene