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WormBase Tree Display for Gene: WBGene00027418

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Name Class

WBGene00027418SMapS_parentSequencecb25.fpc0090
IdentityVersion2
NameCGC_nameCbr-lea-1From_analysisInferred_from_orthology
Sequence_nameCBG04813
Molecular_nameCBG04813
CBG04813.1
CBP47875
Other_nameCBG_04813Accession_evidenceNDBHE601135
Public_nameCbr-lea-1
DB_infoDatabaseNDBlocus_tagCBG_04813
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-lea-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlea
RNASeq_FPKMWBls:0000002101.191From_analysisRNASeq.briggsae.WBls:0000002.control_mean
174.235From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
39.9043From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
89.4338From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
89.6564From_analysisRNASeq.briggsae.WBls:0000002.control_median
89.8791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
98.3631From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000326.0277From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
27.8869From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
29.746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
20.5723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
25.4487From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000047.78985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
8.29159From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
8.79333From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
7.58703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
7.85156From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
8.18807From_analysisRNASeq.briggsae.WBls:0000004.control_mean
8.91858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002710.0217From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.5112From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
14.2522From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.30156From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
12.3817From_analysisRNASeq.briggsae.WBls:0000027.control_median
19.1321From_analysisRNASeq.briggsae.WBls:0000027.control_mean
46.4633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003542.6877From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038168.48From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
17.0695From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
204.657From_analysisRNASeq.briggsae.WBls:0000038.control_mean
30.0852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
602.993From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
99.2826From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:0000041156.781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
65.8799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
78.5938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
83.4055From_analysisRNASeq.briggsae.WBls:0000041.control_median
88.2172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
97.368From_analysisRNASeq.briggsae.WBls:0000041.control_mean
122.499From_analysisRNASeq.briggsae.WBls:0000041.control_median
156.195From_analysisRNASeq.briggsae.WBls:0000041.control_mean
213.731From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
333.969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006312.9642From_analysisRNASeq.briggsae.WBls:0000063.control_mean
14.9161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
15.3409From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
16.4392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
18.125From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
15.89From_analysisRNASeq.briggsae.WBls:0000063.control_median
26.3976From_analysisRNASeq.briggsae.WBls:0000063.control_mean
93.5644From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010126.0277From_analysisRNASeq.briggsae.total_over_all_stages.control_median
63.5017From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
27.8869From_analysisRNASeq.briggsae.total_over_all_stages.control_median
70.1075From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (20)
ParalogWBGene00026320Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027401Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027431Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is an ortholog of C. elegans lea-1. In C. elegans, lea-1 is involved in hyperosmotic response; response to desiccation; and response to heat.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04813
Corresponding_CDS_historyCBG04813:bp189
CBG04813:bp257
Corresponding_transcriptCBG04813.1
Other_sequence (37)
Experimental_infoExpr_patternExpr1065793
Microarray_resultsGPL8303_CB6_WBGene00027418_A
GPL8303_CB6_WBGene00027418_B
GPL8303_CB6_WBGene00027418_C
GPL14143_CBG04813_1846-1905_0.886_29_B
GPL14143_CBG04813_1850-1909_0.882_30_C
GPL14143_CBG04813_2382-2441_0.906_12_A
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
WBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene