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WormBase Tree Display for Gene: WBGene00027447

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Name Class

WBGene00027447SMapS_parentSequencecb25.fpc0090
IdentityVersion1
NameSequence_nameCBG04847
Molecular_nameCBG04847a
CBG04847a.1
CBP42238
CBG04847b
CBP44940
CBG04847b.1
Other_nameCBG_04847Accession_evidenceNDBHE601135
Public_nameCBG04847
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00036954
WBVar00036939
WBVar00036959
WBVar00036944
WBVar00036934
WBVar00036949
RNASeq_FPKMWBls:00000020.183519From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.250788From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.29977From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.125394From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.137639From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.354962From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.709923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.202744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.279766From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.341748From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.516307From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.24884From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.746519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.37326From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.388674From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.808179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000350.292847From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.174619From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0.210802From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.243234From_analysisRNASeq.briggsae.WBls:0000038.control_mean
0.246985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.551331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000410.024943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.052586From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.071484From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.090382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.0911From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.196488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.062562From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.072538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.072823From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.1659From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.39109From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.438412From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.034854From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.069709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.149869From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.174619From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.525039From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.1325From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.451984From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130978
00130979
00130980
00130981
Contained_in_operonCBOPA0628
Ortholog (35)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-247; nhr-269; and nhr-248.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04847a
CBG04847b
Corresponding_CDS_historyCBG04847:bp194
CBG04847:bp255
Corresponding_transcriptCBG04847a.1
CBG04847b.1
Experimental_infoExpr_patternExpr1065395
Microarray_resultsGPL8303_CB6_WBGene00027447_A
GPL8303_CB6_WBGene00027447_B
GPL14143_CBG04847_677-736_0.942_2_B
GPL14143_CBG04847_764-823_0.954_1_A
GPL14143_CBG04847_838-897_0.929_3_C
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
MethodGene