WormBase Tree Display for Gene: WBGene00027517

WBGene00027517 SMap: S_parent: Sequence: cb25.fpc0090
  Identity: Version: 7
    Name: CGC_name: Cbr-nhr-30.2 From_analysis: Inferred_from_orthology
      Sequence_name: CBG04929
      Molecular_name: CBG04929
        CBG04929.1
        CBP43356
      Other_name: CBG_04929 Accession_evidence: NDB HE601135
        CBG_04933
        CBG_04930
        Cbr-nhr-30 From_analysis: Inferred_from_orthology
      Public_name: Cbr-nhr-30.2
    DB_info: Database: NDB locus_tag CBG_04929
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:57 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 15 Oct 2007 15:19:45 WBPerson2970 Name_change: CGC_name: Cbr-nhr-30
        3 31 Aug 2016 10:29:44 WBPerson4025 Event: Acquires_merge: WBGene00027520
        4 31 Aug 2016 10:29:44 WBPerson4025 Event: Acquires_merge: WBGene00027518
        5 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Removed
        6 08 Feb 2019 15:42:26 WBPerson1983 Name_change: CGC_name: Cbr-nhr-30
        7 08 May 2019 10:09:27 WBPerson1983 Name_change: CGC_name: Cbr-nhr-30.2
                Other_name: Cbr-nhr-30
        8 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Cbr-nhr-30
                Other_name: Cbr-nhr-30.2
        9 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cbr-nhr-30.2
                Other_name: Cbr-nhr-30
      Acquires_merge: WBGene00027520
        WBGene00027518
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (18)
    RNASeq_FPKM: WBls:0000002 0.640889 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.788726 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.819778 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        1.02972 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.395608 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.713736 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.714808 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 0.135834 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        0.302919 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.470004 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.201946 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 3.47651 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        3.90732 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        4.33813 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        2.30459 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        2.69645 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        3.16389 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        3.19591 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
      WBls:0000024 (12)
      WBls:0000027 0.135361 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        0.342424 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        1.00348 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.53267 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0.762782 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        1.0484 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.18314 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 1.07027 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.174671 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        0.429043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.507133 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.577089 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.585224 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        1.11942 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 0.185888 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.222055 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.339444 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.347017 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.456834 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.523293 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.490063 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.717731 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        1.16446 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        4.88098 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.027733 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.138667 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.03415 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.066235 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0.470004 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        1.04774 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.554259 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        1.20508 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00131019
      00131020
      00131021
      00131022
    Ortholog (25)
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-30. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG04929
    Corresponding_CDS_history: CBG04929:bp255
    Corresponding_transcript: CBG04929.1
    Other_sequence: NB08387
      MA00568
      NBC00760_1
  Experimental_info: Expr_pattern: Expr1068126
    Microarray_results: GPL8303_CB6_WBGene00027517_A
      GPL8303_CB6_WBGene00027517_B
      GPL14143_CBG04929_761-820_0.922_7_C
      GPL14143_CBG04929_1030-1089_0.954_1_A
      GPL14143_CBG04929_1142-1201_0.862_49_B
  Remark: [180319 gw3] The CGC name Cbr-nhr-30 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson4025
  Method: Gene