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WormBase Tree Display for Gene: WBGene00028294

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Name Class

WBGene00028294SMapS_parentSequencecb25.fpc0143a
IdentityVersion4
NameCGC_nameCbr-itr-1From_analysisInferred_from_orthology
Sequence_nameCBG05938
Molecular_nameCBG05938a
CBG05938a.1
CBP45597
CBG05938b
CBP38351
CBG05938c
CBP39869
CBG05938b.1
CBG05938c.1
Other_nameCBG_05938Accession_evidenceNDBHE600909
Public_nameCbr-itr-1
DB_infoDatabaseNDBlocus_tagCBG_05938
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-itr-1
313 Nov 2007 13:49:49WBPerson2970EventAcquires_mergeWBGene00000336
410 Mar 2010 09:32:07WBPerson1849EventAcquires_mergeWBGene00028293
Acquires_mergeWBGene00000336
WBGene00028293
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classitr
RNASeq_FPKMWBls:000000210.6454From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.2948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
7.64128From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.00022From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
7.85449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
8.42735From_analysisRNASeq.briggsae.WBls:0000002.control_median
9.9477From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.032984From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.502489From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.971995From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.79721From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.38665From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.78125From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.78859From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.79593From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
4.12428From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
4.20451From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.5994From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
4.72168From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002711.0766From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.52151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
26.8732From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.83519From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
12.4249From_analysisRNASeq.briggsae.WBls:0000027.control_median
13.3111From_analysisRNASeq.briggsae.WBls:0000027.control_mean
20.0147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003510.7598From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.8057From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.597From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.7328From_analysisRNASeq.briggsae.WBls:0000038.control_mean
20.3883From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
33.9621From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.77511From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.4948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
12.9485From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
12.9502From_analysisRNASeq.briggsae.WBls:0000041.control_median
12.952From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
14.3636From_analysisRNASeq.briggsae.WBls:0000041.control_mean
19.0589From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
16.0054From_analysisRNASeq.briggsae.WBls:0000041.control_median
17.0973From_analysisRNASeq.briggsae.WBls:0000041.control_mean
21.9309From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
23.1989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006315.5575From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
15.6438From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
17.2355From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
18.7271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
18.7698From_analysisRNASeq.briggsae.WBls:0000063.control_mean
26.6852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
16.4396From_analysisRNASeq.briggsae.WBls:0000063.control_median
17.0877From_analysisRNASeq.briggsae.WBls:0000063.control_mean
8.67741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010112.4638From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.952From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.0515From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.7217From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00131743
00131744
00131745
00131746
00131747
00131748
00131749
00131750
00131751
00131752
Ortholog (40)
ParalogWBGene00038324Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable inositol 1,4,5 trisphosphate binding activity and inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to be located in endoplasmic reticulum and membrane. Is an ortholog of C. elegans itr-1. In C. elegans, itr-1 is involved in several processes, including determination of adult lifespan; multicellular organism reproduction; and system process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05938a
CBG05938b
CBG05938c
Corresponding_CDS_historyCBG05938:bp194
CBG05938:bp212
CBG05938a:bp228
CBG05938a:bp255
CBG05938b:bp228
CBG05938b:bp255
Corresponding_transcriptCBG05938a.1
CBG05938b.1
CBG05938c.1
Other_sequence (58)
Experimental_infoExpr_patternExpr1050563
Microarray_resultsGPL8303_CB6_WBGene00028294_A
GPL14143_CBG05938_8144-8203_0.929_12_C
GPL14143_CBG05938_8372-8431_0.931_9_B
GPL14143_CBG05938_8548-8607_0.940_5_A
MethodGene