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WormBase Tree Display for Gene: WBGene00028330

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Name Class

WBGene00028330SMapS_parentSequencecb25.fpc0143a
IdentityVersion1
NameSequence_nameCBG05980
Molecular_nameCBG05980a
CBG05980a.1
CBP26759
CBG05980b
CBP41166
CBG05980b.1
Other_nameCBG_05980Accession_evidenceNDBHE600909
Public_nameCBG05980
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00006047
RNASeq_FPKMWBls:000000217.814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
19.0913From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
26.8637From_analysisRNASeq.briggsae.WBls:0000002.control_mean
43.6857From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
22.0439From_analysisRNASeq.briggsae.WBls:0000002.control_median
24.9965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
26.3969From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000323.226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
26.1296From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
29.0331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
26.1516From_analysisRNASeq.briggsae.WBls:0000003.control_mean
26.1958From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000419.5093From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
20.364From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
21.2188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
16.8698From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
17.1632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
19.143From_analysisRNASeq.briggsae.WBls:0000004.control_mean
20.954From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271.2477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
23.6849From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.85843From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.26368From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.53279From_analysisRNASeq.briggsae.WBls:0000027.control_median
8.20716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.99955From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003514.0364From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.0098From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
12.7372From_analysisRNASeq.briggsae.WBls:0000038.control_median
13.4645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
16.0119From_analysisRNASeq.briggsae.WBls:0000038.control_mean
34.1406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.43284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004118.2566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
31.7258From_analysisRNASeq.briggsae.WBls:0000041.control_mean
34.9718From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
35.2884From_analysisRNASeq.briggsae.WBls:0000041.control_median
35.6051From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
38.0698From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
20.9132From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
23.0996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
28.486From_analysisRNASeq.briggsae.WBls:0000041.control_mean
29.0357From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006320.2365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
22.4486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
23.1653From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
25.0436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
27.0295From_analysisRNASeq.briggsae.WBls:0000063.control_mean
44.2536From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
15.8253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
22.8069From_analysisRNASeq.briggsae.WBls:0000063.control_median
25.1621From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010120.2365From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.1297From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
20.5749From_analysisRNASeq.briggsae.total_over_all_stages.control_median
20.7102From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (35)
Paralog (16)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Amino acid transporter, transmembrane domain and Transmembrane amino acid transporter protein. Is an ortholog of C. elegans F13H10.3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05980a
CBG05980b
Corresponding_CDS_historyCBG05980:bp194
Corresponding_transcriptCBG05980a.1
CBG05980b.1
Other_sequence (33)
Experimental_infoExpr_patternExpr1054223
Microarray_resultsGPL8303_CB6_WBGene00028330_A
GPL8303_CB6_WBGene00028330_B
GPL14143_CBG05980_1339-1398_0.900_22_C
GPL14143_CBG05980_1734-1793_0.924_13_B
GPL14143_CBG05980_1805-1864_0.969_1_A
MethodGene