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WormBase Tree Display for Gene: WBGene00028496

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Name Class

WBGene00028496SMapS_parentSequencecb25.fpc0143b
IdentityVersion2
NameCGC_nameCbr-nhr-43From_analysisInferred_from_orthology
Sequence_nameCBG06187
Molecular_nameCBG06187
CBG06187.1
CBP44909
Other_nameCBG_06187Accession_evidenceNDBHE600986
Public_nameCbr-nhr-43
DB_infoDatabaseNDBlocus_tagCBG_06187
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-nhr-43
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
AlleleWBVar00111295
WBVar00111301
WBVar00111302
WBVar00111296
WBVar00111297
WBVar00111298
WBVar00111299
WBVar00111300
RNASeq_FPKMWBls:00000024.70518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
5.73484From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.82183From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
6.67752From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.16727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
5.09295From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.2635From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000031.46348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
2.47543From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
3.48737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
2.27846From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
2.40977From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000412.222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
13.7027From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.1834From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
13.0232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
14.0465From_analysisRNASeq.briggsae.WBls:0000004.control_mean
14.7178From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
15.0863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.574293From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
10.2755From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.10216From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.31732From_analysisRNASeq.briggsae.WBls:0000027.control_mean
12.1269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
6.18883From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.26971From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003515.0515From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.3822From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
1.96643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
19.7459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.95074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.66647From_analysisRNASeq.briggsae.WBls:0000038.control_median
9.76132From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000410.743959From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.896419From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.35962From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.82283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.03787From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.68828From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.67183From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.74733From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.17156From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.20602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.820652From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.937677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.08102From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.14822From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.43356From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.46821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
1.25729From_analysisRNASeq.briggsae.WBls:0000063.control_median
1.65524From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.19033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001014.68828From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.89306From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.4393From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.0886From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132009
00132010
00132011
00132012
00132013
00132014
Ortholog (30)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable nuclear receptor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-43.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06187
Corresponding_CDS_historyCBG06187:bp194
CBG06187:bp255
Corresponding_transcriptCBG06187.1
Experimental_infoExpr_patternExpr1067251
Microarray_resultsGPL8303_CB6_WBGene00028496_A
GPL8303_CB6_WBGene00028496_B
GPL14143_CBG06187_649-708_0.849_52_C
GPL14143_CBG06187_804-863_0.918_12_B
GPL14143_CBG06187_929-988_0.878_30_A
MethodGene