WormBase Tree Display for Gene: WBGene00028667

WBGene00028667 SMap: S_parent: Sequence: cb25.fpc0156
  Identity: Version: 4
    Name: CGC_name: Cbr-nhr-212 From_analysis: Inferred_from_orthology
      Sequence_name: CBG06378
      Molecular_name: CBG06378
        CBG06378.1
        CBP39617
      Other_name: CBG_06378 Accession_evidence: NDB HE601320
      Public_name: Cbr-nhr-212
    DB_info: Database: NDB locus_tag CBG_06378
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:58 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-nhr-212
        3 24 Jul 2008 11:56:43 WBPerson1847 Event: Acquires_merge: WBGene00028669
        4 31 Aug 2016 10:30:13 WBPerson4025 Event: Split_into: WBGene00270734
      Acquires_merge: WBGene00028669
      Split_into: WBGene00270734
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000002 0.896403 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        2.10023 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        4.10129 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        9.30725 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        2.14865 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        2.19708 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        3.62524 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.320915 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        0.440405 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.559896 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.293604 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.589542 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.996901 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        1.40426 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.746756 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        1.06697 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        1.40276 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        3.20625 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.272211 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        1.12875 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        3.10015 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        7.89948 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.17111 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        3.12848 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        3.21348 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 3.35271 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.62426 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        3.7171 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        4.03662 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        4.33834 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        4.35614 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        8.65584 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 1.32172 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        1.67548 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        1.7425 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.80952 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        3.07961 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        7.51172 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        3.96357 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        4.2457 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        6.11763 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        7.0381 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 1.68151 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.76709 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.0115 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        2.16345 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        2.46553 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1.68785 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.71955 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        1.88929 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 2.0115 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        3.01927 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2.05587 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.97012 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (54)
    Paralog (220)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Nuclear hormone receptor-like domain superfamily; Ligand-binding domain of nuclear hormone receptor; and Nuclear hormone receptor, ligand-binding domain. Is an ortholog of C. elegans nhr-212. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG06378
    Corresponding_CDS_history: CBG06378:bp194
      CBG06378:bp255
    Corresponding_transcript: CBG06378.1
  Experimental_info: Expr_pattern: Expr1069685
    Microarray_results: GPL8303_CB6_WBGene00028667_A
      GPL14143_CBG06378_793-852_0.898_36_C
      GPL14143_CBG06378_888-947_0.892_39_B
      GPL14143_CBG06378_1030-1089_0.634_207_A
  Method: Gene