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WormBase Tree Display for Gene: WBGene00028674

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Name Class

WBGene00028674SMapS_parentSequencecb25.fpc0156
IdentityVersion2
NameCGC_nameCbr-nhr-130From_analysisInferred_from_orthology
Sequence_nameCBG06387
Molecular_nameCBG06387
CBG06387.1
CBP46070
Other_nameCBG_06387Accession_evidenceNDBHE601320
Public_nameCbr-nhr-130
DB_infoDatabaseNDBlocus_tagCBG_06387
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-nhr-130
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:000000211.2711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.52431From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.33668From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
6.37736From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.00226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.9305From_analysisRNASeq.briggsae.WBls:0000002.control_median
5.53359From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000032.12517From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
2.28078From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.43638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
2.57503From_analysisRNASeq.briggsae.WBls:0000003.control_mean
3.16353From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000042.72437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.41188From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.09938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.77271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.34749From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.38463From_analysisRNASeq.briggsae.WBls:0000004.control_mean
3.97921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.295633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.28641From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.8002From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.81856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.99422From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.02566From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.70203From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000355.85626From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.05633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
11.3226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.98713From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.4135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.7848From_analysisRNASeq.briggsae.WBls:0000038.control_median
8.15611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000412.80039From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.8551From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.16146From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.46782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
4.26756From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.94692From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.25471From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.45795From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.0416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
8.63585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.04871From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.59187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
6.13169From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
6.39655From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
7.12344From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.55148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
4.96584From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.86178From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001014.33668From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.22493From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.21803From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.07155From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132165
00132166
00132167
00132168
Ortholog (53)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-130.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06387
Corresponding_CDS_historyCBG06387:bp194
CBG06387:bp255
Corresponding_transcriptCBG06387.1
Other_sequenceFD514796.1
CR10556
CJC14253_1
CSC00161_1
CRC12334_1
RSC00887_1
RS08978
Experimental_infoExpr_patternExpr1068062
Microarray_resultsGPL8303_CB6_WBGene00028674_A
GPL8303_CB6_WBGene00028674_B
GPL14143_CBG06387_326-385_0.907_13_C
GPL14143_CBG06387_539-598_0.894_16_B
GPL14143_CBG06387_666-725_0.931_2_A
MethodGene