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WormBase Tree Display for Gene: WBGene00028810

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Name Class

WBGene00028810SMapS_parentSequencecb25.fpc0156
IdentityVersion2
NameCGC_nameCbr-nhr-256From_analysisInferred_from_orthology
Sequence_nameCBG06550
Molecular_nameCBG06550
CBG06550.1
CBP26220
Other_nameCBG_06550Accession_evidenceNDBHE601320
Public_nameCbr-nhr-256
DB_infoDatabaseNDBlocus_tagCBG_06550
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-256
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:00000024.86023From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
6.9672From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.76224From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
8.27913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.5996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
6.1253From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.31123From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000312.5969From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
17.5887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
7.60502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
11.1479From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
12.1139From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000416.8513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
17.9771From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
19.1029From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
12.7174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
15.4203From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
16.6798From_analysisRNASeq.briggsae.WBls:0000004.control_mean
19.3069From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.279885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.996687From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.22498From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.39837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.19753From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.47882From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.24032From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000356.45366From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.714493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
5.53073From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.87148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.6601From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.44872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.08821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000417.19936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
7.91261From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.02204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
8.10122From_analysisRNASeq.briggsae.WBls:0000041.control_median
8.1804From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
8.24863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
13.3383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
8.21451From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.00624From_analysisRNASeq.briggsae.WBls:0000041.control_mean
9.04872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.4223From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2.44947From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.62655From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.20893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.98959From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.91774From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.13488From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.56193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001016.82919From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.44221From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.52687From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.80073From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132257
00132258
00132259
00132260
Ortholog (24)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-256.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06550
Corresponding_CDS_historyCBG06550:bp194
Corresponding_transcriptCBG06550.1
Other_sequenceCRC06925_1
Hbac_isotig06005
CR09150
CBC17401_1
CR09149
Experimental_infoExpr_patternExpr1051235
Microarray_resultsGPL8303_CB6_WBGene00028810_A
GPL8303_CB6_WBGene00028810_B
GPL14143_CBG06550_752-811_0.908_10_C
GPL14143_CBG06550_865-924_0.914_8_A
GPL14143_CBG06550_1243-1302_0.952_1_B
MethodGene