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WormBase Tree Display for Gene: WBGene00028988

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Name Class

WBGene00028988SMapS_parentSequencecb25.fpc0156
IdentityVersion2
NameCGC_nameCbr-ceh-33From_analysisInferred_from_orthology
Sequence_nameCBG06764
Molecular_nameCBG06764
CBG06764.1
CBP32590
Other_nameCBG_06764Accession_evidenceNDBHE601320
Public_nameCbr-ceh-33
DB_infoDatabaseNDBlocus_tagCBG_06764
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ceh-33
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classceh
RNASeq_FPKMWBls:00000021.11979From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.52911From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.83025From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.725917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.02132From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.12751From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.07201From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.128114From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.184218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.085409From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.07978From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.1066From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.13342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.3539From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.38691From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.50989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.85754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.746604From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.48001From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.69343From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.48268From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.6647From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.21876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.13173From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.481749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.75296From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.05795From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.1768From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.36293From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.10955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.146272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.15289From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.179387From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.205885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.391654From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.06157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.557582From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.586204From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.909279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
1.04133From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.162451From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.189339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.622915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.094669From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.180199From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.26894From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.746604From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.34274From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.831119From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.28487From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132451
OrthologWBGene00000454Caenorhabditis elegansFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00151855Caenorhabditis brenneriFrom_analysisOMA
WormBase-Compara
WBGene00191655Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00132289Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g1163Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g720Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8472Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5154Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18721Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g17182Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20822Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10479Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g24410Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00124.g5031Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ceh-33Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19830Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00047.g2463Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03871Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018523Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g4652Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50192900Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00233279Brugia malayiFrom_analysisWormBase-Compara
chrV_pilon.g14215Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00052748Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00244068Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00264079Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00027265Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028594Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028989Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041666Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans ceh-33.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06764
Corresponding_CDS_historyCBG06764:bp194
Corresponding_transcriptCBG06764.1
Other_sequenceMCC01070_1
MC02418
Experimental_infoExpr_patternExpr1066082
Microarray_resultsGPL8303_CB6_WBGene00028988_A
GPL14143_CBG06764_51-110_0.894_32_C
GPL14143_CBG06764_305-364_0.935_8_A
GPL14143_CBG06764_449-508_0.828_64_B
MethodGene