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WormBase Tree Display for Gene: WBGene00029207

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Name Class

WBGene00029207SMapS_parentSequencecb25.fpc0305a
IdentityVersion2
NameCGC_nameCbr-slc-36.2From_analysisInferred_from_orthology
Sequence_nameCBG07032
Molecular_nameCBG07032
CBG07032.1
CBP01837
Other_nameCBG_07032Accession_evidenceNDBHE600960
Public_nameCbr-slc-36.2
DB_infoDatabaseNDBlocus_tagCBG_07032
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
229 Apr 2015 12:12:43WBPerson2970Name_changeCGC_nameCbr-slc-36.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classslc
Allele (17)
RNASeq_FPKMWBls:000000219.4887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
22.5163From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
24.8563From_analysisRNASeq.briggsae.WBls:0000002.control_mean
32.5639From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
20.1509From_analysisRNASeq.briggsae.WBls:0000002.control_mean
21.0025From_analysisRNASeq.briggsae.WBls:0000002.control_median
6.03475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000032.8637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
2.87068From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.87766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
2.27789From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
2.67308From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000048.01028From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
8.7478From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
9.48533From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
10.5154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
10.8861From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
9.3845From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
9.65632From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:000002715.4328From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.80926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
39.7035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.78571From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
22.2446From_analysisRNASeq.briggsae.WBls:0000027.control_median
32.37From_analysisRNASeq.briggsae.WBls:0000027.control_mean
83.1816From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003552.4263From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.3422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
44.5783From_analysisRNASeq.briggsae.WBls:0000038.control_mean
44.9886From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
49.7504From_analysisRNASeq.briggsae.WBls:0000038.control_median
54.5121From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
67.4703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000412.12405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.15971From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.29273From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.42574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.90008From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.89083From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.47773From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.52971From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.18668From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.99003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006310.9793From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
11.691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
14.1456From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
15.6698From_analysisRNASeq.briggsae.WBls:0000063.control_mean
20.6303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
20.9028From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
12.9183From_analysisRNASeq.briggsae.WBls:0000063.control_median
13.987From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.57299From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010114.1456From_analysisRNASeq.briggsae.total_over_all_stages.control_median
23.7565From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
10.9327From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.6924From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (25)
Paralog (16)
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Amino acid transporter, transmembrane domain and Transmembrane amino acid transporter protein. Is an ortholog of C. elegans slc-36.2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07032
Corresponding_CDS_historyCBG07032:bp194
Corresponding_transcriptCBG07032.1
Other_sequence (36)
Experimental_infoExpr_patternExpr1056086
Microarray_resultsGPL8303_CB6_WBGene00029207_A
GPL8303_CB6_WBGene00029207_B
GPL8303_CB6_WBGene00029207_C
GPL8303_CB6_WBGene00029207_D
GPL8303_CB6_WBGene00029207_E
GPL14143_CBG07032_849-908_0.808_8_C
GPL14143_CBG07032_1052-1111_0.834_1_A
GPL14143_CBG07032_1206-1265_0.820_5_B
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene