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WormBase Tree Display for Gene: WBGene00029551

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Name Class

WBGene00029551SMapS_parentSequencecb25.fpc0829
IdentityVersion2
NameCGC_nameCbr-nhr-3From_analysisInferred_from_orthology
Sequence_nameCBG07552
Molecular_nameCBG07552
CBG07552.1
CBP21929
Other_nameCBG_07552Accession_evidenceNDBHE601041
Public_nameCbr-nhr-3
DB_infoDatabaseNDBlocus_tagCBG_07552
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-nhr-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:00000026.78735From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.67983From_analysisRNASeq.briggsae.WBls:0000002.control_mean
9.42961From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.82253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
8.89025From_analysisRNASeq.briggsae.WBls:0000002.control_mean
9.47556From_analysisRNASeq.briggsae.WBls:0000002.control_median
9.5215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000031.59921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.51853From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
5.43786From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
3.219From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
3.41869From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000434.728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
36.4791From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
38.2302From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
36.0541From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
39.1098From_analysisRNASeq.briggsae.WBls:0000004.control_mean
40.9613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
45.5754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002710.517From_analysisRNASeq.briggsae.WBls:0000027.control_mean
18.647From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.26018From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
9.64391From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
14.1455From_analysisRNASeq.briggsae.WBls:0000027.control_median
245.848From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
69.3498From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003586.4629From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038108.167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
30.939From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
43.1512From_analysisRNASeq.briggsae.WBls:0000038.control_median
50.8376From_analysisRNASeq.briggsae.WBls:0000038.control_mean
55.3635From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.88071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004110.4087From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
12.2224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.84578From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
7.10887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
8.75879From_analysisRNASeq.briggsae.WBls:0000041.control_median
8.89644From_analysisRNASeq.briggsae.WBls:0000041.control_mean
11.0331From_analysisRNASeq.briggsae.WBls:0000041.control_mean
11.3155From_analysisRNASeq.briggsae.WBls:0000041.control_median
13.8653From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
16.7474From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.2263From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.2276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
6.30311From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
6.57888From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
7.02192From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
17.6043From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
6.441From_analysisRNASeq.briggsae.WBls:0000063.control_median
7.2893From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010121.5237From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.64391From_analysisRNASeq.briggsae.total_over_all_stages.control_median
11.3155From_analysisRNASeq.briggsae.total_over_all_stages.control_median
27.7259From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132931
00132932
00132933
00132934
00132935
00132936
Ortholog (27)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable nuclear receptor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07552
Corresponding_CDS_historyCBG07552:bp194
CBG07552:bp255
Corresponding_transcriptCBG07552.1
Other_sequence (27)
Experimental_infoExpr_patternExpr1064313
Microarray_resultsGPL8303_CB6_WBGene00029551_A
GPL8303_CB6_WBGene00029551_B
GPL14143_CBG07552_199-258_0.773_39_B
GPL14143_CBG07552_346-405_0.805_10_A
GPL14143_CBG07552_775-834_0.508_186_C
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
MethodGene