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WormBase Tree Display for Gene: WBGene00029668

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Name Class

WBGene00029668SMapS_parentSequencecb25.fpc0829
IdentityVersion2
NameCGC_nameCbr-nkat-3From_analysisInferred_from_orthology
Sequence_nameCBG07704
Molecular_nameCBG07704
CBG07704.1
CBP35940
Other_nameCBG_07704Accession_evidenceNDBHE601041
Public_nameCbr-nkat-3
DB_infoDatabaseNDBlocus_tagCBG_07704
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nkat-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnkat
RNASeq_FPKMWBls:000000213.7595From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
18.9964From_analysisRNASeq.briggsae.WBls:0000002.control_mean
19.2083From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
24.0213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
13.3569From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
16.4839From_analysisRNASeq.briggsae.WBls:0000002.control_median
17.5865From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000322.7749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
29.2202From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
35.6656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
30.6591From_analysisRNASeq.briggsae.WBls:0000003.control_mean
33.5368From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000434.8759From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
35.1614From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
35.447From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
32.7744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
35.7221From_analysisRNASeq.briggsae.WBls:0000004.control_mean
36.0154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
39.4978From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002712.4988From_analysisRNASeq.briggsae.WBls:0000027.control_mean
25.8413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.92413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
8.73089From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
12.7599From_analysisRNASeq.briggsae.WBls:0000027.control_median
13.5713From_analysisRNASeq.briggsae.WBls:0000027.control_mean
16.7889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003523.3307From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.2765From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
16.0026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
19.3366From_analysisRNASeq.briggsae.WBls:0000038.control_median
20.728From_analysisRNASeq.briggsae.WBls:0000038.control_mean
22.6706From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
29.9623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004112.3801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
13.9674From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
14.4418From_analysisRNASeq.briggsae.WBls:0000041.control_mean
14.6599From_analysisRNASeq.briggsae.WBls:0000041.control_median
15.3524From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
16.0673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
11.4793From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
12.483From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
13.2252From_analysisRNASeq.briggsae.WBls:0000041.control_median
13.6216From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006310.8457From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
11.4017From_analysisRNASeq.briggsae.WBls:0000063.control_mean
13.4776From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
16.2737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
16.4116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
12.4698From_analysisRNASeq.briggsae.WBls:0000063.control_mean
14.8757From_analysisRNASeq.briggsae.WBls:0000063.control_median
17.8104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010116.4116From_analysisRNASeq.briggsae.total_over_all_stages.control_median
18.8698From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
17.2997From_analysisRNASeq.briggsae.total_over_all_stages.control_median
20.0254From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133064
00133065
Ortholog (41)
ParalogWBGene00026805Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029584Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031645Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031679Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041661Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable pyridoxal phosphate binding activity. Predicted to be involved in biosynthetic process. Is an ortholog of C. elegans nkat-3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07704
Corresponding_CDS_historyCBG07704:bp194
Corresponding_transcriptCBG07704.1
Other_sequence (33)
Experimental_infoExpr_patternExpr1052763
Microarray_resultsGPL8303_CB6_WBGene00029668_A
GPL8303_CB6_WBGene00029668_B
GPL14143_CBG07704_600-659_0.799_13_C
GPL14143_CBG07704_972-1031_0.713_77_B
GPL14143_CBG07704_1189-1248_0.851_1_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene