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WormBase Tree Display for Gene: WBGene00029812

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Name Class

WBGene00029812SMapS_parentSequencecb25.fpc1402b
IdentityVersion2
NameCGC_nameCbr-pmr-1From_analysisInferred_from_orthology
Sequence_nameCBG07921
Molecular_nameCBG07921
CBG07921.1
CBP26620
Other_nameCBG_07921Accession_evidenceNDBHE600996
Public_nameCbr-pmr-1
DB_infoDatabaseNDBlocus_tagCBG_07921
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-pmr-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpmr
RNASeq_FPKMWBls:000000215.5292From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
15.5301From_analysisRNASeq.briggsae.WBls:0000002.control_mean
27.1662From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.89488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
11.4055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
13.4674From_analysisRNASeq.briggsae.WBls:0000002.control_median
14.499From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000322.7939From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
28.7687From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
34.7434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
27.3837From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
28.307From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000414.3558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
14.9609From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.5661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
15.2175From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
15.3628From_analysisRNASeq.briggsae.WBls:0000004.control_mean
15.6006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
16.0741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002714.7068From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.11819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
9.03344From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.27532From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
11.7594From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.9911From_analysisRNASeq.briggsae.WBls:0000027.control_median
19.9373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003525.3914From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.0578From_analysisRNASeq.briggsae.WBls:0000038.control_median
13.3561From_analysisRNASeq.briggsae.WBls:0000038.control_mean
18.5089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
21.5895From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
5.7195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
7.60668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004119.3371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
19.4797From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
19.6802From_analysisRNASeq.briggsae.WBls:0000041.control_median
19.8807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
20.3358From_analysisRNASeq.briggsae.WBls:0000041.control_mean
22.6456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
17.3839From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
20.3759From_analysisRNASeq.briggsae.WBls:0000041.control_mean
23.5282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006312.8784From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
14.2187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
14.4359From_analysisRNASeq.briggsae.WBls:0000063.control_mean
14.8351From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
15.0053From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
15.2422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
12.0683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
14.0413From_analysisRNASeq.briggsae.WBls:0000063.control_mean
14.5269From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010115.5292From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.8685From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
15.5834From_analysisRNASeq.briggsae.total_over_all_stages.control_median
16.2838From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133185
00133186
00133187
00133188
00133189
00133190
00133191
Ortholog (33)
Paralog (14)
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity; ATP hydrolysis activity; and P-type calcium transporter activity. Predicted to be involved in calcium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans pmr-1. In C. elegans, pmr-1 is involved in several processes, including metal ion transport; response to metal ion; and response to oxidative stress.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07921
Corresponding_CDS_historyCBG07921:bp194
Corresponding_transcriptCBG07921.1
Other_sequence (69)
Experimental_infoExpr_patternExpr1060523
Microarray_resultsGPL8303_CB6_WBGene00029812_A
GPL14143_CBG07921_1671-1730_0.758_141_B
GPL14143_CBG07921_1868-1927_0.875_33_A
GPL14143_CBG07921_2668-2727_0.904_18_C
MethodGene