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WormBase Tree Display for Gene: WBGene00029816

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Name Class

WBGene00029816SMapS_parentSequencecb25.fpc1402b
IdentityVersion2
NameCGC_nameCbr-nhr-85From_analysisInferred_from_orthology
Sequence_nameCBG07928
Molecular_nameCBG07928
CBG07928.1
CBP07891
Other_nameCBG_07928Accession_evidenceNDBHE600996
Public_nameCbr-nhr-85
DB_infoDatabaseNDBlocus_tagCBG_07928
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-nhr-85
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:000000210.7218From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
11.7357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.33123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.92958From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.50128From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
8.0725From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.11154From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.906853From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.05189From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.19692From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
1.01924From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.041From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000041.40734From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.84707From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.2868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.64356From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.82178From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.82791From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1.9433From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:000002714.4803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.29445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
7.40023From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
8.05833From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.9403From_analysisRNASeq.briggsae.WBls:0000027.control_median
12.0475From_analysisRNASeq.briggsae.WBls:0000027.control_mean
24.0152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003539.37From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.8256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
16.1894From_analysisRNASeq.briggsae.WBls:0000038.control_mean
18.6523From_analysisRNASeq.briggsae.WBls:0000038.control_median
21.4791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
23.7576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.69532From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000413.46603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.62084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.90778From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.92018From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.21951From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
4.32474From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.02508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
3.16829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.47075From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.54344From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000631.41041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2.19533From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.23113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.3068From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.36884From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.65945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.81633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
2.13216From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.26897From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010110.2386From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.21951From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.54344From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.9442From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133197
00133198
00133199
00133200
Ortholog (30)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-85.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07928
Corresponding_CDS_historyCBG07928:bp194
Corresponding_transcriptCBG07928.1
Other_sequence (19)
Experimental_infoExpr_patternExpr1061479
Microarray_resultsGPL8303_CB6_WBGene00029816_A
GPL8303_CB6_WBGene00029816_B
GPL14143_CBG07928_786-845_0.875_15_C
GPL14143_CBG07928_984-1043_0.821_39_B
GPL14143_CBG07928_1406-1465_0.947_1_A
MethodGene