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WormBase Tree Display for Gene: WBGene00030124

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Name Class

WBGene00030124SMapS_parentSequencecb25.fpc1570
IdentityVersion3
NameCGC_nameCbr-cha-1From_analysisInferred_from_orthology
Sequence_nameCBG08307
Molecular_nameCBG08307a
CBG08307a.1
CBP02034
CBG08307b
CBP45639
CBG08307c
CBP36774
CBG08307b.1
CBG08307c.1
Other_nameCBG_08307Accession_evidenceNDBHE601100
CBG_08305
Public_nameCbr-cha-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Oct 2016 10:55:05WBPerson4025EventAcquires_mergeWBGene00030122
320 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbr-cha-1
Acquires_mergeWBGene00030122
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcha
Allele (32)
RNASeq_FPKMWBls:000000212.9938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
13.1633From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
13.299From_analysisRNASeq.briggsae.WBls:0000002.control_mean
13.74From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
11.3425From_analysisRNASeq.briggsae.WBls:0000002.control_mean
13.0786From_analysisRNASeq.briggsae.WBls:0000002.control_median
5.47296From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.075847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.595169From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.11449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
1.17014From_analysisRNASeq.briggsae.WBls:0000003.control_mean
2.32008From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.2888From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.44039From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.59197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
4.05712From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.09962From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
4.5877From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
4.71753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.12165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
18.0593From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.74054From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.97383From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.3999From_analysisRNASeq.briggsae.WBls:0000027.control_median
13.2995From_analysisRNASeq.briggsae.WBls:0000027.control_mean
29.2764From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003525.856From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.0866From_analysisRNASeq.briggsae.WBls:0000038.control_median
13.1817From_analysisRNASeq.briggsae.WBls:0000038.control_mean
16.7118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
25.6864From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.8672From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
7.46142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000411.59741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.6526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.98342From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.31424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
3.87931From_analysisRNASeq.briggsae.WBls:0000041.control_mean
9.95298From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
10.6256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.4765From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.79693From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.63876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000631.26415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.50394From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.91966From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.05334From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.42669From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.15226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.17318From_analysisRNASeq.briggsae.WBls:0000063.control_median
2.55773From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.07967From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010110.2992From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.59197From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.72903From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.8288From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133533
00133534
00133535
00133536
00133537
00133538
Ortholog (36)
ParalogWBGene00028372Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028725Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029792Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030402Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032570Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036355Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036912Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038244Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042135Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable acyltransferase activity and xenobiotic transmembrane transporter activity. Predicted to be involved in transmembrane transport and xenobiotic transport. Predicted to be located in membrane. Is an ortholog of C. elegans cha-1. In C. elegans, cha-1 is involved in acetylcholine biosynthetic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08307a
CBG08307b
CBG08307c
Corresponding_CDS_historyCBG08307:bp194
CBG08307:bp255
Corresponding_transcriptCBG08307a.1
CBG08307b.1
CBG08307c.1
Other_sequence (50)
Experimental_infoExpr_patternExpr1062584
Expr1068998
Microarray_resultsGPL8303_CB6_WBGene00030122_A
GPL8303_CB6_WBGene00030122_B
GPL8303_CB6_WBGene00030124_A
GPL8303_CB6_WBGene00030124_B
GPL14143_CBG08305_1047-1106_0.900_10_C
GPL14143_CBG08305_1446-1505_0.892_13_B
GPL14143_CBG08305_1859-1918_0.960_1_A
GPL14143_CBG08307_134-193_0.830_59_B
GPL14143_CBG08307_425-484_0.847_50_A
GPL14143_CBG08307_1545-1604_0.947_8_C
MethodGene