WormBase Tree Display for Gene: WBGene00030789

WBGene00030789 SMap: S_parent: Sequence: cb25.fpc2193
  Identity: Version: 3
    Name: CGC_name: Cbr-tbp-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG09138
      Molecular_name: CBG09138
        CBG09138.1
        CBP02248
      Other_name: CBG_09138 Accession_evidence: NDB HE601302
      Public_name: Cbr-tbp-1
    DB_info: Database: NDB locus_tag CBG_09138
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:00 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-tbp-1
        3 28 Apr 2017 00:53:27 WBPerson4025 Event: Split_into: WBGene00271626
      Split_into: WBGene00271626
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tbp
    RNASeq_FPKM: WBls:0000002 7.07223 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        8.05448 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        8.29754 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        9.76591 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        14.9484 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        8.9102 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        9.96025 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 25.478 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        34.5731 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        43.6681 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        26.9171 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        32.0211 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 21.0808 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        21.6562 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        22.2315 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        14.2545 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        22.1594 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        23.2303 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        29.9999 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.428218 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        1.85872 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.14522 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        3.00272 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.57397 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        2.6303 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        4.94504 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 5.95208 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 3.82354 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        4.12551 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        4.41314 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        4.70077 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        5.03783 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        7.50148 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 11.239 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        17.3062 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        18.0621 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        18.7017 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        19.3414 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        20.5824 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        14.2147 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        14.4679 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        16.265 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        16.3179 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 11.5144 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        7.38448 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        8.5208 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        9.36273 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        9.46255 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        9.93142 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        8.35835 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        8.99168 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        9.19533 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 10.4206 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        7.50148 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        11.9351 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        8.99168 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00134203
      00134204
    Ortholog (28)
    Paralog: WBGene00033307 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00271626 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity. Predicted to be involved in DNA-templated transcription initiation. Is an ortholog of C. elegans tbp-1. In C. elegans, tbp-1 is involved in positive regulation of DNA-templated transcription. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG09138
    Corresponding_CDS_history: CBG09138:bp259
    Corresponding_transcript: CBG09138.1
    Other_sequence (40)
  Experimental_info: Expr_pattern: Expr1053204
    Microarray_results: GPL14143_CBG09138_356-415_0.925_6_C
      GPL14143_CBG09138_425-484_0.929_3_A
      GPL14143_CBG09138_600-659_0.800_78_B
  Method: Gene