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WormBase Tree Display for Gene: WBGene00030976

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Name Class

WBGene00030976SMapS_parentSequencecb25.fpc2220a
IdentityVersion2
NameCGC_nameCbr-nhr-47From_analysisInferred_from_orthology
Sequence_nameCBG09380
Molecular_nameCBG09380
CBG09380.1
CBP44955
Other_nameCBG_09380Accession_evidenceNDBHE600954
Public_nameCbr-nhr-47
DB_infoDatabaseNDBlocus_tagCBG_09380
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:00WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-47
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
AlleleWBVar00137068
WBVar00137069
WBVar00137067
RNASeq_FPKMWBls:000000223.2528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
24.6602From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
25.9268From_analysisRNASeq.briggsae.WBls:0000002.control_mean
29.8675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
27.0981From_analysisRNASeq.briggsae.WBls:0000002.control_mean
27.2638From_analysisRNASeq.briggsae.WBls:0000002.control_median
30.612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000361.4636From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
65.6412From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
69.8187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
68.8668From_analysisRNASeq.briggsae.WBls:0000003.control_mean
75.318From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000463.726From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
64.6859From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
65.6458From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
60.9819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
62.3291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
62.9858From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
63.1337From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.950844From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
21.5997From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.1683From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
8.90628From_analysisRNASeq.briggsae.WBls:0000027.control_mean
12.861From_analysisRNASeq.briggsae.WBls:0000027.control_mean
12.884From_analysisRNASeq.briggsae.WBls:0000027.control_median
24.7253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003519.0754From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.0024From_analysisRNASeq.briggsae.WBls:0000038.control_mean
16.1841From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
16.7488From_analysisRNASeq.briggsae.WBls:0000038.control_median
17.3135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
17.7264From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.78578From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004131.9156From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
44.9409From_analysisRNASeq.briggsae.WBls:0000041.control_mean
48.7046From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
49.1315From_analysisRNASeq.briggsae.WBls:0000041.control_median
49.5584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
49.5851From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
31.2877From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
33.0218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
40.6789From_analysisRNASeq.briggsae.WBls:0000041.control_mean
40.8632From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006315.9412From_analysisRNASeq.briggsae.WBls:0000063.control_mean
17.357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
18.0327From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
20.6673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
23.6492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
17.6222From_analysisRNASeq.briggsae.WBls:0000063.control_mean
19.35From_analysisRNASeq.briggsae.WBls:0000063.control_median
26.0267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010123.6492From_analysisRNASeq.briggsae.total_over_all_stages.control_median
28.2417From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
26.6583From_analysisRNASeq.briggsae.total_over_all_stages.control_median
32.271From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00134415
00134416
00134417
00134418
Ortholog (30)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-47.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09380
Corresponding_CDS_historyCBG09380:bp194
CBG09380:bp255
Corresponding_transcriptCBG09380.1
Other_sequence (38)
Experimental_infoExpr_patternExpr1051207
Microarray_resultsGPL8303_CB6_WBGene00030976_A
GPL8303_CB6_WBGene00030976_B
GPL14143_CBG09380_651-710_0.863_42_C
GPL14143_CBG09380_783-842_0.672_198_B
GPL14143_CBG09380_878-937_0.906_18_A
MethodGene