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WormBase Tree Display for Gene: WBGene00031223

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Name Class

WBGene00031223SMapS_parentSequencecb25.fpc2220c
IdentityVersion2
NameCGC_nameCbr-sqv-4From_analysisInferred_from_orthology
Sequence_nameCBG09668
Molecular_nameCBG09668
CBG09668.1
CBP02412
Other_nameCBG_09668Accession_evidenceNDBHE600998
Public_nameCbr-sqv-4
DB_infoDatabaseNDBlocus_tagCBG_09668
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:00WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-sqv-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsqv
RNASeq_FPKMWBls:000000252.4639From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
68.9854From_analysisRNASeq.briggsae.WBls:0000002.control_mean
72.6259From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
81.8663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
75.1669From_analysisRNASeq.briggsae.WBls:0000002.control_mean
77.2461From_analysisRNASeq.briggsae.WBls:0000002.control_median
93.7114From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000034.74603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
4.90249From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
5.05896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
5.77894From_analysisRNASeq.briggsae.WBls:0000003.control_mean
7.53184From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000044.30656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
4.5705From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.83443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.94295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
4.38312From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
4.43882From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.72704From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002715.774From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.18887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
35.7179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.41523From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
12.801From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.1272From_analysisRNASeq.briggsae.WBls:0000027.control_mean
17.1868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003536.8401From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003817.1609From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
23.2952From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
23.6873From_analysisRNASeq.briggsae.WBls:0000038.control_mean
24.4138From_analysisRNASeq.briggsae.WBls:0000038.control_median
25.5324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
28.7605From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:0000041142.489From_analysisRNASeq.briggsae.WBls:0000041.control_mean
161.312From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
165.318From_analysisRNASeq.briggsae.WBls:0000041.control_median
169.324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
182.205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
57.1159From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
118.139From_analysisRNASeq.briggsae.WBls:0000041.control_mean
120.394From_analysisRNASeq.briggsae.WBls:0000041.control_median
59.3996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
79.4749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
40.8025From_analysisRNASeq.briggsae.WBls:0000063.control_mean
47.9553From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
48.4382From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
52.3511From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
55.2677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
48.1089From_analysisRNASeq.briggsae.WBls:0000063.control_mean
50.3946From_analysisRNASeq.briggsae.WBls:0000063.control_median
84.6409From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010128.7605From_analysisRNASeq.briggsae.total_over_all_stages.control_median
44.0511From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
27.1465From_analysisRNASeq.briggsae.total_over_all_stages.control_median
42.96From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00134716
00134717
00134718
Contained_in_operonCBOPA0313
Ortholog (36)
Structured_descriptionAutomated_descriptionPredicted to enable NAD binding activity and UDP-glucose 6-dehydrogenase activity. Is an ortholog of C. elegans sqv-4. In C. elegans, sqv-4 is involved in several processes, including egg-laying behavior; glycosaminoglycan biosynthetic process; and vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09668
Corresponding_CDS_historyCBG09668:bp194
Corresponding_transcriptCBG09668.1
Other_sequence (44)
Experimental_infoExpr_patternExpr1056756
Microarray_resultsGPL8303_CB6_WBGene00031223_A
GPL8303_CB6_WBGene00031223_B
GPL14143_CBG09668_875-934_0.903_21_C
GPL14143_CBG09668_1276-1335_0.928_7_A
GPL14143_CBG09668_1285-1344_0.964_1_B
Expression_clusterWBPaper00051425:CB_L1_vs_embryo_downregulated
MethodGene