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WormBase Tree Display for Gene: WBGene00031804

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Name Class

WBGene00031804SMapS_parentSequencecb25.fpc2310c
IdentityVersion2
NameCGC_nameCbr-nhr-57From_analysisInferred_from_orthology
Sequence_nameCBG10415
Molecular_nameCBG10415
CBG10415.1
CBP02565
Other_nameCBG_10415Accession_evidenceNDBHE600935
Public_nameCbr-nhr-57
DB_infoDatabaseNDBlocus_tagCBG_10415
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-57
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:000000210.5052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.57232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
7.7465From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.94134From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.34428From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
6.65941From_analysisRNASeq.briggsae.WBls:0000002.control_median
7.29208From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000034.9048From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
5.39647From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
5.88814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
5.40074From_analysisRNASeq.briggsae.WBls:0000003.control_mean
5.40928From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000419.0207From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
21.9466From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
24.8726From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
20.6535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
21.8272From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
22.0122From_analysisRNASeq.briggsae.WBls:0000004.control_mean
23.6869From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.393124From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.28299From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
17.5762From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.41744From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.4552From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.62742From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
6.21993From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000353.17651From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.827768From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
10.1921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
11.9309From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.76599From_analysisRNASeq.briggsae.WBls:0000038.control_mean
8.1132From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.15265From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:00000412.03395From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.42667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.49689From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.56711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.39995From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.57205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
15.3349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
4.36491From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.84957From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.16271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000631.18416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.39233From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.439From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.46772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.87076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.45336From_analysisRNASeq.briggsae.WBls:0000063.control_median
1.78283From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.73535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001015.57232From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.96513From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.75778From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.91501From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00135259
00135260
00135261
00135262
Ortholog (26)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-57. In C. elegans, nhr-57 is involved in response to hypoxia.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG10415
Corresponding_transcriptCBG10415.1
Experimental_infoExpr_patternExpr1063014
Microarray_resultsGPL8303_CB6_WBGene00031804_A
GPL8303_CB6_WBGene00031804_B
GPL8303_CB6_WBGene00031804_C
GPL8303_CB6_WBGene00031804_D
GPL8303_CB6_WBGene00031804_E
GPL14143_CBG10415_776-835_0.917_17_A
GPL14143_CBG10415_909-968_0.962_1_B
GPL14143_CBG10415_1075-1134_0.957_2_C
MethodGene