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WormBase Tree Display for Gene: WBGene00032222

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Name Class

WBGene00032222SMapS_parentSequencecb25.fpc2397
IdentityVersion2
NameCGC_nameCbr-lron-7From_analysisInferred_from_orthology
Sequence_nameCBG11012
Molecular_nameCBG11012a
CBG11012a.1
CBP49717
CBG11012b
CBP49721
CBG11012b.1
Other_nameCBG_11012Accession_evidenceNDBHE601482
Public_nameCbr-lron-7
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
209 Dec 2011 15:52:14WBPerson2970Name_changeCGC_nameCbr-lron-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlron
RNASeq_FPKMWBls:000000250.3026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
65.4753From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
69.6739From_analysisRNASeq.briggsae.WBls:0000002.control_mean
93.2439From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
50.6826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
58.0789From_analysisRNASeq.briggsae.WBls:0000002.control_median
64.9261From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000311.3887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
11.919From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
12.4492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
11.5004From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
11.7794From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000420.7212From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
21.7875From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
22.8537From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
20.1407From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
22.0766From_analysisRNASeq.briggsae.WBls:0000004.control_mean
22.818From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
23.8496From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002718.0935From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.91377From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
45.208From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.15879From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
26.1834From_analysisRNASeq.briggsae.WBls:0000027.control_median
26.424From_analysisRNASeq.briggsae.WBls:0000027.control_mean
51.4155From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003538.6873From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
59.2006From_analysisRNASeq.briggsae.WBls:0000038.control_mean
69.7957From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
71.197From_analysisRNASeq.briggsae.WBls:0000038.control_median
72.5983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
79.6833From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004187.224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
88.0863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
92.2243From_analysisRNASeq.briggsae.WBls:0000041.control_median
92.346From_analysisRNASeq.briggsae.WBls:0000041.control_mean
96.3622From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
97.7116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
120.393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
94.0905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
95.2263From_analysisRNASeq.briggsae.WBls:0000041.control_median
97.3113From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:0000063101.845From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
119.187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
80.75From_analysisRNASeq.briggsae.WBls:0000063.control_mean
90.8763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
91.8418From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
80.8462From_analysisRNASeq.briggsae.WBls:0000063.control_mean
81.3271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
91.359From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010154.9396From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
61.1968From_analysisRNASeq.briggsae.total_over_all_stages.control_median
51.049From_analysisRNASeq.briggsae.total_over_all_stages.control_median
54.4596From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (17)
ParalogWBGene00026853Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029567Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029681Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033740Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041443Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041445Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: BspA type Leucine rich repeat region; Leucine-rich repeat, typical subtype; Leucine-rich repeat; BspA type Leucine rich repeat region (6 copies); Leucine-rich repeat domain superfamily; Cysteine-rich flanking region, C-terminal; and Leucine rich repeat. Is an ortholog of C. elegans lron-7.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG11012a
CBG11012b
Corresponding_CDS_historyCBG11012:bp194
CBG11012:bp266
Corresponding_transcriptCBG11012a.1
CBG11012b.1
Other_sequence (11)
Experimental_infoExpr_patternExpr1051016
Microarray_resultsGPL8303_CB6_WBGene00032222_A
GPL8303_CB6_WBGene00032222_B
GPL14143_CBG11012_708-767_0.796_8_C
GPL14143_CBG11012_1078-1137_0.798_7_B
GPL14143_CBG11012_1348-1407_0.773_29_A
MethodGene