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WormBase Tree Display for Gene: WBGene00032626

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Name Class

WBGene00032626SMapS_parentSequencecb25.fpc2454b
IdentityVersion4
NameCGC_nameCbr-sde-2From_analysisInferred_from_orthology
Sequence_nameCBG11516
Molecular_nameCBG11516
CBG11516.1
CBP22555
Other_nameCBG_11516Accession_evidenceNDBHE600908
Public_nameCbr-sde-2
DB_infoDatabaseNDBlocus_tagCBG_11516
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:02WBPerson1971EventImportedInitial conversion from brigace
224 Jul 2008 11:56:40WBPerson1847EventAcquires_mergeWBGene00032627
331 Aug 2016 10:30:13WBPerson4025EventSplit_intoWBGene00270650
404 Jun 2020 14:38:21WBPerson1983Name_changeCGC_nameCbr-sde-2
Acquires_mergeWBGene00032627
Split_intoWBGene00270650
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsde
RNASeq_FPKMWBls:000000236.3641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
45.3571From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
49.7139From_analysisRNASeq.briggsae.WBls:0000002.control_mean
67.4206From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
49.6124From_analysisRNASeq.briggsae.WBls:0000002.control_median
50.7524From_analysisRNASeq.briggsae.WBls:0000002.control_mean
53.8677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003110.322From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
124.54From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
96.1035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
102.976From_analysisRNASeq.briggsae.WBls:0000003.control_mean
88.2852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000445.775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
49.6337From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
53.4923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
45.7086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
46.1342From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
48.7503From_analysisRNASeq.briggsae.WBls:0000004.control_mean
52.6416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002714.7245From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.90661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
33.7551From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.51188From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
20.6335From_analysisRNASeq.briggsae.WBls:0000027.control_median
24.0952From_analysisRNASeq.briggsae.WBls:0000027.control_mean
52.2071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003523.9007From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003822.9148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
30.2593From_analysisRNASeq.briggsae.WBls:0000038.control_mean
31.1868From_analysisRNASeq.briggsae.WBls:0000038.control_median
39.4587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
51.8523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.81124From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004151.6282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
78.2962From_analysisRNASeq.briggsae.WBls:0000041.control_mean
84.4946From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
85.5517From_analysisRNASeq.briggsae.WBls:0000041.control_median
86.6088From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
90.4531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
68.419From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
76.6729From_analysisRNASeq.briggsae.WBls:0000041.control_mean
78.4339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
81.4642From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
25.1668From_analysisRNASeq.briggsae.WBls:0000063.control_mean
26.5871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
28.4431From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
34.4583From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
36.3454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
28.8186From_analysisRNASeq.briggsae.WBls:0000063.control_mean
31.4507From_analysisRNASeq.briggsae.WBls:0000063.control_median
47.0774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010136.3641From_analysisRNASeq.briggsae.total_over_all_stages.control_median
42.6703From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
45.7418From_analysisRNASeq.briggsae.total_over_all_stages.control_median
46.5846From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (31)
ParalogWBGene00027364Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Replication stress response SDE2 C-terminal; Silencing defective 2 N-terminal ubiquitin domain; and Sde2, N-terminal ubiquitin domain. Is an ortholog of C. elegans sde-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG11516
Corresponding_CDS_historyCBG11516:bp194
CBG11516:bp255
Corresponding_transcriptCBG11516.1
Other_sequence (28)
Experimental_infoExpr_patternExpr1050254
Microarray_resultsGPL8303_CB6_WBGene00032626_A
GPL14143_CBG11516_1431-1490_0.866_56_B
GPL14143_CBG11516_2209-2268_0.856_62_A
GPL14143_CBG11516_2283-2342_0.942_4_C
MethodGene