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WormBase Tree Display for Gene: WBGene00033574

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Name Class

WBGene00033574SMapS_parentSequencecb25.fpc2888a2
IdentityVersion2
NameCGC_nameCbr-xpg-1From_analysisInferred_from_orthology
Sequence_nameCBG12657
Molecular_nameCBG12657
CBG12657.1
CBP39300
Other_nameCBG_12657Accession_evidenceNDBHE600940
Public_nameCbr-xpg-1
DB_infoDatabaseNDBlocus_tagCBG_12657
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-xpg-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxpg
RNASeq_FPKMWBls:000000210.1011From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
10.7191From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.50693From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
9.44238From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.59127From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
9.2296From_analysisRNASeq.briggsae.WBls:0000002.control_mean
9.34618From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000317.8775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
18.6478From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
19.4181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
11.4172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
16.2376From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000046.244From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
6.29365From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
6.3433From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
5.36276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
6.14348From_analysisRNASeq.briggsae.WBls:0000004.control_mean
6.36336From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
6.40399From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.140637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.613387From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.05187From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.40159From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.92485From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.34798From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.23631From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000353.38025From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.395714From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
4.3481From_analysisRNASeq.briggsae.WBls:0000038.control_mean
4.60686From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.1241From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.64135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.74846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004118.3994From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
26.7019From_analysisRNASeq.briggsae.WBls:0000041.control_mean
28.104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
28.6433From_analysisRNASeq.briggsae.WBls:0000041.control_median
29.1826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
31.1216From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
22.7181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
23.3954From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
25.4869From_analysisRNASeq.briggsae.WBls:0000041.control_mean
25.7497From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006317.3175From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.1357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
7.30215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
8.02533From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
8.21494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
9.59912From_analysisRNASeq.briggsae.WBls:0000063.control_mean
10.1494From_analysisRNASeq.briggsae.WBls:0000063.control_mean
12.9007From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
8.12014From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001016.74846From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.5731From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.94208From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.94761From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00136982
00136983
00136984
Ortholog (25)
ParalogWBGene00035319Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037095Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040054Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and nuclease activity. Is an ortholog of C. elegans xpg-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12657
Corresponding_CDS_historyCBG12657:bp194
CBG12657:bp255
Corresponding_transcriptCBG12657.1
Other_sequence (25)
Experimental_infoExpr_patternExpr1067466
Microarray_resultsGPL14143_CBG12657_1573-1632_0.879_36_C
GPL14143_CBG12657_1683-1742_0.884_27_B
GPL14143_CBG12657_2094-2153_0.917_11_A
MethodGene