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WormBase Tree Display for Gene: WBGene00034118

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Name Class

WBGene00034118SMapS_parentSequencecb25.fpc3052a
IdentityVersion2
NameCGC_nameCbr-pdha-1From_analysisInferred_from_orthology
Sequence_nameCBG13339
Molecular_nameCBG13339
CBG13339.1
CBP03264
Other_nameCBG_13339Accession_evidenceNDBHE600919
Public_nameCbr-pdha-1
DB_infoDatabaseNDBlocus_tagCBG_13339
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
208 Dec 2011 12:03:58WBPerson2970Name_changeCGC_nameCbr-pdha-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpdha
RNASeq_FPKMWBls:0000002109.946From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
209.738From_analysisRNASeq.briggsae.WBls:0000002.control_mean
225.551From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
293.716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
150.913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
188.232From_analysisRNASeq.briggsae.WBls:0000002.control_median
195.031From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000336.072From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
44.0063From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
51.9406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
46.0501From_analysisRNASeq.briggsae.WBls:0000003.control_mean
50.1376From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000431.8996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
34.1727From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
36.4459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
17.2461From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
31.3559From_analysisRNASeq.briggsae.WBls:0000004.control_mean
34.1969From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
36.991From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:0000027140.005From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
32.8655From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
89.0638From_analysisRNASeq.briggsae.WBls:0000027.control_mean
94.3209From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
117.163From_analysisRNASeq.briggsae.WBls:0000027.control_median
128.374From_analysisRNASeq.briggsae.WBls:0000027.control_mean
246.303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035289.226From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038134.507From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
134.673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
197.468From_analysisRNASeq.briggsae.WBls:0000038.control_median
224.064From_analysisRNASeq.briggsae.WBls:0000038.control_mean
260.263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
366.811From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041219.152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
238.404From_analysisRNASeq.briggsae.WBls:0000041.control_mean
239.349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
243.163From_analysisRNASeq.briggsae.WBls:0000041.control_median
246.977From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
248.137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
181.015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
203.701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
223.055From_analysisRNASeq.briggsae.WBls:0000041.control_mean
229.251From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:0000063118.629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
123.391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
127.989From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
133.851From_analysisRNASeq.briggsae.WBls:0000063.control_mean
142.699From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
156.545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
135.344From_analysisRNASeq.briggsae.WBls:0000063.control_median
149.298From_analysisRNASeq.briggsae.WBls:0000063.control_mean
226.534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101140.005From_analysisRNASeq.briggsae.total_over_all_stages.control_median
165.441From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
141.352From_analysisRNASeq.briggsae.total_over_all_stages.control_median
156.443From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137597
00137598
00137599
00137600
Ortholog (38)
ParalogWBGene00035912Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00271755Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable pyruvate dehydrogenase (acetyl-transferring) activity. Predicted to be involved in acetyl-CoA biosynthetic process from pyruvate. Predicted to be located in intracellular membrane-bounded organelle. Is an ortholog of C. elegans pdha-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13339
Corresponding_CDS_historyCBG13339:bp194
CBG13339:bp255
Corresponding_transcriptCBG13339.1
Other_sequence (149)
Experimental_infoExpr_patternExpr1064810
Microarray_resultsGPL8303_CB6_WBGene00034118_A
GPL8303_CB6_WBGene00034118_B
GPL8303_CB6_WBGene00034118_C
GPL14143_CBG13339_610-669_0.835_4_C
GPL14143_CBG13339_613-672_0.842_2_A
GPL14143_CBG13339_848-907_0.734_27_B
MethodGene