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WormBase Tree Display for Gene: WBGene00034790

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Name Class

WBGene00034790SMapS_parentSequencecb25.fpc3857a
IdentityVersion2
NameCGC_nameCbr-sax-3From_analysisInferred_from_orthology
Sequence_nameCBG14221
Molecular_nameCBG14221a
CBG14221a.1
CBP09577
CBG14221b
CBP42236
CBG14221b.1
Other_nameCBG_14221Accession_evidenceNDBHE600983
Public_nameCbr-sax-3
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-sax-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsax
RNASeq_FPKMWBls:000000214.8452From_analysisRNASeq.briggsae.WBls:0000002.control_mean
18.0856From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
19.637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
6.81305From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
10.523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
13.7647From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.3043From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000378.2317From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
82.3215From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
86.4113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
83.0448From_analysisRNASeq.briggsae.WBls:0000003.control_mean
84.4914From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000484.7756From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
85.9837From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
87.1917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
82.7775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
84.3319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
84.8028From_analysisRNASeq.briggsae.WBls:0000004.control_mean
84.9375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:000002710.5209From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
15.2108From_analysisRNASeq.briggsae.WBls:0000027.control_mean
31.7287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.3829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
18.6651From_analysisRNASeq.briggsae.WBls:0000027.control_mean
19.7744From_analysisRNASeq.briggsae.WBls:0000027.control_median
29.0279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003526.9797From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.3118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
12.5174From_analysisRNASeq.briggsae.WBls:0000038.control_mean
12.7701From_analysisRNASeq.briggsae.WBls:0000038.control_median
15.2283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
19.3582From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
5.17134From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004111.5016From_analysisRNASeq.briggsae.WBls:0000041.control_mean
12.1944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
12.3443From_analysisRNASeq.briggsae.WBls:0000041.control_median
12.4942From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
13.2883From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
8.02943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
10.1119From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.68934From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
7.83959From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
9.75588From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
3.5775From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.66846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.99589From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
4.73479From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
5.48836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.36534From_analysisRNASeq.briggsae.WBls:0000063.control_median
4.55816From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.46147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010113.2883From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.481From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.0206From_analysisRNASeq.briggsae.total_over_all_stages.control_median
27.6323From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (34)
Paralog (18)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Fibronectin type III superfamily; Immunoglobulin I-set domain; Immunoglobulin I-set; Fibronectin type III; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Fibronectin type III domain; and Immunoglobulin subtype. Is an ortholog of C. elegans sax-3. In C. elegans, sax-3 is involved in generation of neurons and regulation of sensory neuron axon guidance.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14221a
CBG14221b
Corresponding_CDS_historyCBG14221:bp194
CBG14221:bp255
Corresponding_transcriptCBG14221a.1
CBG14221b.1
Other_sequence (33)
Experimental_infoExpr_patternExpr1064541
Microarray_resultsGPL8303_CB6_WBGene00034790_A
GPL8303_CB6_WBGene00034790_B
GPL14143_CBG14221_3208-3267_0.800_13_C
GPL14143_CBG14221_3411-3470_0.806_6_B
GPL14143_CBG14221_3641-3700_0.684_293_A
MethodGene