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WormBase Tree Display for Gene: WBGene00035490

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Name Class

WBGene00035490SMapS_parentSequencecb25.fpc4010
IdentityVersion2
NameCGC_nameCbr-pef-1From_analysisInferred_from_orthology
Sequence_nameCBG15166
Molecular_nameCBG15166a
CBG15166a.1
CBP45535
CBG15166b
CBP39867
CBG15166c
CBP42377
CBG15166b.1
CBG15166c.1
Other_nameCBG_15166Accession_evidenceNDBHE601055
Public_nameCbr-pef-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-pef-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpef
RNASeq_FPKMWBls:00000025.45995From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.74117From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
5.85946From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.37727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
3.0218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
5.15005From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.60056From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000031.24923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
1.28683From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.32443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.895643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.15643From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000042.69027From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
3.13232From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.57438From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.18355From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.52244From_analysisRNASeq.briggsae.WBls:0000004.control_mean
3.52336From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
4.64065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.341583From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.9839From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.97564From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.60145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.79268From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.20174From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.88004From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.06237From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.62483From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.66577From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.67334From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.7067From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.36183From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000412.78234From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
3.0458From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.41187From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.41244From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.77907From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
4.04026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.90967From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.24588From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.90899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.9188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.474406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.520663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.59751From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.625023From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.677517From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.689941From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.65127From_analysisRNASeq.briggsae.WBls:0000063.control_median
12.4317From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
2.56988From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001013.0458From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.39373From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.54887From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.81112From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00138972
00138973
00138974
00138975
00138976
00138977
Ortholog (33)
Paralog (40)
Structured_descriptionAutomated_descriptionPredicted to enable metal ion binding activity and phosphoprotein phosphatase activity. Predicted to be involved in detection of stimulus involved in sensory perception. Is an ortholog of C. elegans pef-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG15166a
CBG15166b
CBG15166c
Corresponding_CDS_historyCBG15166:bp194
CBG15166:bp255
Corresponding_transcriptCBG15166a.1
CBG15166b.1
CBG15166c.1
Other_sequence (31)
Experimental_infoExpr_patternExpr1051226
Microarray_resultsGPL8303_CB6_WBGene00035490_A
GPL14143_CBG15166_1461-1520_0.926_16_C
GPL14143_CBG15166_1936-1995_0.954_2_B
GPL14143_CBG15166_2118-2177_0.968_1_A
MethodGene