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WormBase Tree Display for Gene: WBGene00035859

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Name Class

WBGene00035859SMapS_parentSequencecb25.fpc4030a2
IdentityVersion2
NameCGC_nameCbr-xpd-1From_analysisInferred_from_orthology
Sequence_nameCBG15713
Molecular_nameCBG15713
CBG15713.1
CBP03819
Other_nameCBG_15713Accession_evidenceNDBHE600979
Public_nameCbr-xpd-1
DB_infoDatabaseNDBlocus_tagCBG_15713
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
221 Jul 2014 15:54:07WBPerson2970Name_changeCGC_nameCbr-xpd-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxpd
AlleleWBVar00002894
WBVar00002889
RNASeq_FPKMWBls:000000213.2997From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
17.6805From_analysisRNASeq.briggsae.WBls:0000002.control_mean
19.5053From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
20.2364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
15.0424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
17.021From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.2738From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000318.4369From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
21.796From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
25.1552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
20.0701From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
21.2207From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000411.0602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
11.1213From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
11.1823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
10.0418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
10.7352From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
11.2406From_analysisRNASeq.briggsae.WBls:0000004.control_mean
13.1837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.1868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.41245From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
4.01079From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.53668From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.53948From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.91955From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.06817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000359.42804From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.3153From_analysisRNASeq.briggsae.WBls:0000038.control_mean
11.1608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
11.4145From_analysisRNASeq.briggsae.WBls:0000038.control_median
11.6682From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
14.4462From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.98611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004118.572From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
30.0292From_analysisRNASeq.briggsae.WBls:0000041.control_mean
33.6727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
33.7939From_analysisRNASeq.briggsae.WBls:0000041.control_median
33.9152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
33.9571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
22.6371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
22.6893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
27.5739From_analysisRNASeq.briggsae.WBls:0000041.control_mean
28.181From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006318.6298From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
18.9893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
19.5038From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
20.0239From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
20.3494From_analysisRNASeq.briggsae.WBls:0000063.control_mean
24.6From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
19.7638From_analysisRNASeq.briggsae.WBls:0000063.control_median
20.9168From_analysisRNASeq.briggsae.WBls:0000063.control_mean
23.7539From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010113.2997From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.4411From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.8729From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.6056From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00139287
00139288
00139289
00139290
00139291
00139292
00139293
00139294
00139295
Ortholog (33)
ParalogWBGene00025337Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037830Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038895Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042796Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be involved in nucleotide-excision repair. Predicted to be located in nucleus. Is an ortholog of C. elegans xpd-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG15713
Corresponding_CDS_historyCBG15713:bp194
Corresponding_transcriptCBG15713.1
Other_sequence (40)
Experimental_infoExpr_patternExpr1052371
Microarray_resultsGPL8303_CB6_WBGene00035859_A
GPL8303_CB6_WBGene00035859_B
GPL14143_CBG15713_1259-1318_0.891_6_C
GPL14143_CBG15713_1554-1613_0.909_2_B
GPL14143_CBG15713_1670-1729_0.908_3_A
MethodGene