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WormBase Tree Display for Gene: WBGene00035875

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Name Class

WBGene00035875SMapS_parentSequencecb25.fpc4030a2
IdentityVersion2
NameCGC_nameCbr-nhr-80From_analysisInferred_from_orthology
Sequence_nameCBG15730
Molecular_nameCBG15730
CBG15730.1
CBP46812
Other_nameCBG_15730Accession_evidenceNDBHE600979
Public_nameCbr-nhr-80
DB_infoDatabaseNDBlocus_tagCBG_15730
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-80
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:00000021.95442From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.96829From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.25624From_analysisRNASeq.briggsae.WBls:0000002.control_mean
9.84601From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.5952From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.28174From_analysisRNASeq.briggsae.WBls:0000002.control_median
4.59098From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000031.00221From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
1.87009From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.73797From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.44469From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.72829From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000042.71943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.78635From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.85327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
2.35458From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
2.82995From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.89093From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
3.33154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.371104From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.13604From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.03701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.2884From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.40345From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.20569From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000353.88516From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.1836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
1.19712From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.99411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.18499From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.37587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4.43767From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000411.98077From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.08601From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.59184From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.7462From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.09766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
3.82036From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.8934From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.06614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
3.0819From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.30949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000634.88723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
5.04774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
5.06962From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
5.63031From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
6.06754From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.70278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
3.59717From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
5.05868From_analysisRNASeq.briggsae.WBls:0000063.control_median
5.65581From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001013.37587From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.85104From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.0819From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.59147From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00139324
00139325
00139326
00139327
Ortholog (30)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-80. In C. elegans, nhr-80 is involved in determination of adult lifespan; positive regulation of metabolic process; and post-embryonic development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG15730
Corresponding_CDS_historyCBG15730:bp194
CBG15730:bp255
Corresponding_transcriptCBG15730.1
Other_sequence (19)
Experimental_infoExpr_patternExpr1060961
Microarray_resultsGPL8303_CB6_WBGene00035875_A
GPL8303_CB6_WBGene00035875_B
GPL14143_CBG15730_739-798_0.903_28_C
GPL14143_CBG15730_893-952_0.902_32_B
GPL14143_CBG15730_1067-1126_0.917_17_A
MethodGene