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WormBase Tree Display for Gene: WBGene00036254

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Name Class

WBGene00036254SMapS_parentSequencecb25.fpc4033c
IdentityVersion2
NameCGC_nameCbr-mec-4From_analysisInferred_from_orthology
Sequence_nameCBG16250
Molecular_nameCBG16250
CBG16250.1
CBP37569
Other_nameCBG_16250Accession_evidenceNDBHE600961
Public_nameCbr-mec-4
DB_infoDatabaseNDBlocus_tagCBG_16250
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
221 Apr 2008 17:10:51WBPerson2970Name_changeCGC_nameCbr-mec-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmec
AlleleWBVar00123696
RNASeq_FPKMWBls:00000021.48946From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.66623From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.97964From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.78324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.05971From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.57784From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.74966From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.555312From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.920941From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.28657From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
1.10575From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.47536From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.84229From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.08075From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.31922From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.67878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.93063From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
2.06767From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.56743From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.421002From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.813557From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.01527From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.81125From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.20093From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.40853From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.5883From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.30915From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.322988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.09178From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.14091From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.19681From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.30183From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.84703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.969599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.14432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.18721From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.2301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.54359From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.83034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.95157From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.0345From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.67303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.3596From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.325107From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.336763From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.642331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.716376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.40124From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.483719From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.723628From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.48946From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.84776From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.67251From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.91162From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00139641
00139642
00139643
00139644
00139645
Contained_in_operonCBOPA0453
Ortholog (30)
Paralog (27)
Structured_descriptionAutomated_descriptionPredicted to enable sodium channel activity. Predicted to be involved in sodium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans mec-4. In C. elegans, mec-4 is involved in regulation of multicellular organismal process; response to mechanical stimulus; and sodium ion transmembrane transport.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG16250
Corresponding_CDS_historyCBG16250:bp194
CBG16250:bp205
CBG16250:bp255
Corresponding_transcriptCBG16250.1
Other_sequencePPC12150_1
JI211692.1
Oden_isotig08538
Oden_isotig22436
Dviv_isotig28064
FK801600.1
Tcol_isotig24133
JI233135.1
Acan_isotig14824
Experimental_infoExpr_patternExpr1052752
Microarray_resultsGPL8303_CB6_WBGene00036254_A
GPL8303_CB6_WBGene00036254_B
GPL14143_CBG16250_1373-1432_0.748_61_B
GPL14143_CBG16250_1665-1724_0.737_75_A
GPL14143_CBG16250_2146-2205_0.322_368_C
ReferenceWBPaper00003265
MethodGene