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WormBase Tree Display for Gene: WBGene00036844

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Name Class

WBGene00036844SMapS_parentSequencecb25.fpc4063
IdentityVersion5
NameSequence_nameCBG17088
Molecular_nameCBG17088
CBG17088.1
CBP48954
Other_nameCBG_17088Accession_evidenceNDBHE601529
Public_nameCBG17088
DB_infoDatabaseNDBlocus_tagCBG_17088
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:06WBPerson1971EventImportedInitial conversion from brigace
221 Apr 2008 17:10:51WBPerson2970Name_changeCGC_nameCbr-nhr-112
320 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameRemoved
416 May 2018 12:34:46WBPerson4025EventSplit_intoWBGene00303246
516 May 2018 12:35:00WBPerson4025EventSplit_intoWBGene00303247
Split_intoWBGene00303246
WBGene00303247
StatusLive
Gene_infoBiotypeSO:0001217
Allele (12)
RNASeq_FPKMWBls:00000022.77956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.33808From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.88409From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.35058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.68013From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.11733From_analysisRNASeq.briggsae.WBls:0000002.control_median
5.70627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000033.96639From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
5.05736From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
6.14833From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
2.00363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
4.03945From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000044.93269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
5.01472From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
5.09675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
4.2931From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
4.97288From_analysisRNASeq.briggsae.WBls:0000004.control_mean
5.18847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
5.3534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.109715From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.30138From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
18.0009From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.47066From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.31436From_analysisRNASeq.briggsae.WBls:0000027.control_median
7.18483From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.32734From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003510.8995From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.503789From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
4.4133From_analysisRNASeq.briggsae.WBls:0000038.control_mean
4.95061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
5.25022From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.54982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.64899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004110.3988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
5.40846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
7.79332From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
8.30037From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.6971From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.60088From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
10.8078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
6.3492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
8.39308From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.13655From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.42726From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.73661From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
5.55321From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
5.70991From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.14271From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.64491From_analysisRNASeq.briggsae.WBls:0000063.control_median
7.72From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001015.35058From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.37921From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.38093From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.59859From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00140249
00140250
00140251
00140252
Ortholog (30)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-112 and nhr-271. In C. elegans, nhr-112 is involved in defense response to Gram-negative bacterium and innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG17088
Corresponding_CDS_historyCBG17088:bp265
Corresponding_transcriptCBG17088.1
Other_sequenceCBC09620_1
Remark[180319 gw3] The CGC name Cbr-nhr-112 was deleted as there was no evidence to support it.Curator_confirmedWBPerson4025
MethodGene